Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3j20
         (672 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC012565-1|AAH12565.1|  206|Homo sapiens mitochondrial ribosomal...   159   6e-39
AK000601-1|BAA91282.1|  206|Homo sapiens protein ( Homo sapiens ...   159   6e-39
AB033102-1|BAA86590.1| 1068|Homo sapiens KIAA1276 protein protein.     30   8.7  

>BC012565-1|AAH12565.1|  206|Homo sapiens mitochondrial ribosomal
           protein L22 protein.
          Length = 206

 Score =  159 bits (387), Expect = 6e-39
 Identities = 77/162 (47%), Positives = 105/162 (64%)
 Frame = +2

Query: 131 QNNKKIYPPQRIDEPTRPAFVCHQKTNIKYSPDKLWXVACLIRGXTVXEALKXLXFXNKK 310
           + NK +YPPQ   EP RPA + H +  IKYS DK+W +A LIRG ++ +AL  L F +KK
Sbjct: 47  KKNKIVYPPQLPGEPRRPAEIYHCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKK 106

Query: 311 GALFVKEAVLEAQEMAIXDXNVEFKSNLWVAESXSGKGMVFKGIRRHARGRLGEVRYKYS 490
           GA  +KE +LEAQ+MA+ D NVEF+SNL++AES SG+G   K IR H RGR G +   Y 
Sbjct: 107 GAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYC 166

Query: 491 HYFVRLEEGKPPTDYYKRKPLLPSNQLQDWLEQMRRRKITNS 616
           HYFV+L EG PP       P       +++++Q+R R I ++
Sbjct: 167 HYFVKLVEGPPPP---PEPPKTAVAHAKEYIQQLRSRTIVHT 205


>AK000601-1|BAA91282.1|  206|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20594 fis, clone KAT08731. ).
          Length = 206

 Score =  159 bits (387), Expect = 6e-39
 Identities = 77/162 (47%), Positives = 105/162 (64%)
 Frame = +2

Query: 131 QNNKKIYPPQRIDEPTRPAFVCHQKTNIKYSPDKLWXVACLIRGXTVXEALKXLXFXNKK 310
           + NK +YPPQ   EP RPA + H +  IKYS DK+W +A LIRG ++ +AL  L F +KK
Sbjct: 47  KKNKIVYPPQLPGEPRRPAEIYHCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKK 106

Query: 311 GALFVKEAVLEAQEMAIXDXNVEFKSNLWVAESXSGKGMVFKGIRRHARGRLGEVRYKYS 490
           GA  +KE +LEAQ+MA+ D NVEF+SNL++AES SG+G   K IR H RGR G +   Y 
Sbjct: 107 GAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYC 166

Query: 491 HYFVRLEEGKPPTDYYKRKPLLPSNQLQDWLEQMRRRKITNS 616
           HYFV+L EG PP       P       +++++Q+R R I ++
Sbjct: 167 HYFVKLVEGPPPP---PEPPKTAVAHAKEYIQQLRSRTIVHT 205


>AB033102-1|BAA86590.1| 1068|Homo sapiens KIAA1276 protein protein.
          Length = 1068

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 26/109 (23%), Positives = 50/109 (45%)
 Frame = +2

Query: 275 EALKXLXFXNKKGALFVKEAVLEAQEMAIXDXNVEFKSNLWVAESXSGKGMVFKGIRRHA 454
           E L+ +    ++    +K+ +++  E  +    VE KS   V  S   +    K ++R  
Sbjct: 416 EDLRKIKHQTEEEKKHLKDQLVKRLEDLVKKHTVEIKS---VRSSVEAER---KKLQREV 469

Query: 455 RGRLGEVRYKYSHYFVRLEEGKPPTDYYKRKPLLPSNQLQDWLEQMRRR 601
             +L EVR K      +LEE K   +   +  LL   +L+++++Q + R
Sbjct: 470 EAQLEEVRKKSEKEIKQLEEEKAALNVKLQNSLLEVLRLEEFIQQNKTR 518


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,186,511
Number of Sequences: 237096
Number of extensions: 1315069
Number of successful extensions: 2252
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2252
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)