Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3j20
         (672 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070969-1|AAL48591.1|  233|Drosophila melanogaster RE06857p pro...   222   3e-58
AE014298-2476|AAF48662.2|  233|Drosophila melanogaster CG4742-PA...   222   3e-58
AE013599-317|AAM68910.1|  708|Drosophila melanogaster CG30384-PA...    33   0.47 

>AY070969-1|AAL48591.1|  233|Drosophila melanogaster RE06857p
           protein.
          Length = 233

 Score =  222 bits (543), Expect = 3e-58
 Identities = 100/174 (57%), Positives = 126/174 (72%), Gaps = 1/174 (0%)
 Frame = +2

Query: 98  WTKAT-AXKSXIQNNKKIYPPQRIDEPTRPAFVCHQKTNIKYSPDKLWXVACLIRGXTVX 274
           W K     +  ++ NK ++PPQ  DE  R A+VCH ++NIKYSPDK+W +A  +RG +V 
Sbjct: 60  WNKYNYGPRKWLEYNKTVHPPQETDEEPRNAYVCHMRSNIKYSPDKMWYIAAFVRGMSVD 119

Query: 275 EALKXLXFXNKKGALFVKEAVLEAQEMAIXDXNVEFKSNLWVAESXSGKGMVFKGIRRHA 454
           EALK L F  KKGA  VKE +LEAQ++A+   NVE+KSNLW+AES  GKG VFKG+RRHA
Sbjct: 120 EALKQLNFVLKKGATDVKETILEAQQIAVERHNVEYKSNLWIAESFVGKGRVFKGVRRHA 179

Query: 455 RGRLGEVRYKYSHYFVRLEEGKPPTDYYKRKPLLPSNQLQDWLEQMRRRKITNS 616
           RGR G+V YK+ HYFVRLEEG+PP  YY ++P  P  Q + W+EQMR RKI NS
Sbjct: 180 RGRFGKVEYKHCHYFVRLEEGEPPQHYY-QEPQTPEQQYESWMEQMRSRKIINS 232


>AE014298-2476|AAF48662.2|  233|Drosophila melanogaster CG4742-PA
           protein.
          Length = 233

 Score =  222 bits (543), Expect = 3e-58
 Identities = 100/174 (57%), Positives = 126/174 (72%), Gaps = 1/174 (0%)
 Frame = +2

Query: 98  WTKAT-AXKSXIQNNKKIYPPQRIDEPTRPAFVCHQKTNIKYSPDKLWXVACLIRGXTVX 274
           W K     +  ++ NK ++PPQ  DE  R A+VCH ++NIKYSPDK+W +A  +RG +V 
Sbjct: 60  WNKYNYGPRKWLEYNKTVHPPQETDEEPRNAYVCHMRSNIKYSPDKMWYIAAFVRGMSVD 119

Query: 275 EALKXLXFXNKKGALFVKEAVLEAQEMAIXDXNVEFKSNLWVAESXSGKGMVFKGIRRHA 454
           EALK L F  KKGA  VKE +LEAQ++A+   NVE+KSNLW+AES  GKG VFKG+RRHA
Sbjct: 120 EALKQLNFVLKKGATDVKETILEAQQIAVERHNVEYKSNLWIAESFVGKGRVFKGVRRHA 179

Query: 455 RGRLGEVRYKYSHYFVRLEEGKPPTDYYKRKPLLPSNQLQDWLEQMRRRKITNS 616
           RGR G+V YK+ HYFVRLEEG+PP  YY ++P  P  Q + W+EQMR RKI NS
Sbjct: 180 RGRFGKVEYKHCHYFVRLEEGEPPQHYY-QEPQTPEQQYESWMEQMRSRKIINS 232


>AE013599-317|AAM68910.1|  708|Drosophila melanogaster CG30384-PA
           protein.
          Length = 708

 Score = 32.7 bits (71), Expect = 0.47
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +2

Query: 464 LGEVRYKYSHYFVRLEEGKPPTD--YYKRKPLLPSNQLQDWLEQMRRR 601
           L  +R + SH+ +R EEG+PP+D   Y  K     ++ + W++Q+RR+
Sbjct: 620 LSGLRLEISHFQLREEEGEPPSDGTDYNGK----ESEEKPWIQQLRRK 663


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,212,275
Number of Sequences: 53049
Number of extensions: 399921
Number of successful extensions: 817
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)