Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3j20
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-4|CAA21022.1|  260|Caenorhabditis elegans Hypothetical ...    89   2e-18
L16621-8|AAA28228.1|  632|Caenorhabditis elegans Hypothetical pr...    29   2.3  

>AL031633-4|CAA21022.1|  260|Caenorhabditis elegans Hypothetical
           protein Y39A1A.6 protein.
          Length = 260

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
 Frame = +2

Query: 137 NKKIYPPQRIDEPT---RPAFVCHQKTNIKYSPDKLWXVACLIRGXTVXEALKXLXFXNK 307
           NK ++PP  I   T   +P  V H K ++ +SP ++W    L+    V EA+  L     
Sbjct: 97  NKVVWPPNYIVPETGLPKPKEVFHCKESVHFSPKRMWAACQLVWKMNVDEAITQLDMQQL 156

Query: 308 KGALFVKEAVLEAQEMAIXDXNVEFKSNLWVAESXSGKGMVFKGIRRHARGRLGEVRYKY 487
           K    + + + +A+  A  + ++E+ S ++VA++   +  + KG RRHA      +RY+Y
Sbjct: 157 KACNLLMDTIKKAKSRAADEFHIEYPSQMYVADAFPVQSNIVKGARRHAHDNWNTIRYRY 216

Query: 488 SHYFVRLEEGKPPTDYYKRKPLLPSNQLQDWLEQMRRRKITNS 616
            H FVRLEEG  P    +       + + ++   +R R +  S
Sbjct: 217 IHIFVRLEEGPAPQQKQRHPQKNGWDHMDEYYNYLRSRTVKYS 259


>L16621-8|AAA28228.1|  632|Caenorhabditis elegans Hypothetical
           protein ZK688.2 protein.
          Length = 632

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 449 HARGRLGEVRYKYSHYFVRLEEGKPPTDYYKRKPLLPSNQLQ 574
           H + R  E++YKYS Y+V  +     T   ++K L+ S+  Q
Sbjct: 166 HEKDRFDEIQYKYSKYWVPFQWAFSLTYEARKKGLIESDYYQ 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,203,411
Number of Sequences: 27780
Number of extensions: 216058
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)