Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3j19
(717 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49830-13|AAK31474.1| 826|Caenorhabditis elegans Hypothetical p... 30 1.9
Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical pr... 29 2.5
AL021571-6|CAN99719.1| 142|Caenorhabditis elegans Hypothetical ... 29 4.4
Z74041-4|CAD56597.1| 394|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z74041-3|CAA98522.1| 368|Caenorhabditis elegans Hypothetical pr... 28 5.8
AC084161-3|AAK29731.2| 249|Caenorhabditis elegans Hypothetical ... 28 5.8
U29082-1|AAA68401.1| 251|Caenorhabditis elegans 2 (zwei) ig-dom... 28 7.7
AF456250-1|AAL59608.1| 251|Caenorhabditis elegans secreted 2-im... 28 7.7
AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical ... 28 7.7
>U49830-13|AAK31474.1| 826|Caenorhabditis elegans Hypothetical
protein C33F10.2 protein.
Length = 826
Score = 29.9 bits (64), Expect = 1.9
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Frame = -2
Query: 347 VY*TLSRLLTTPFFVNSTLIFS-SRLDIFLPFFTTASPVRIVLFCKLLNI--------IN 195
+Y T S +LT +N++ +F S + L R ++C LL+I +N
Sbjct: 414 LYETASNMLTVDHLLNASAVFGISSIISRLTNIGVIPTQRADVWCTLLDINETKWRDYLN 473
Query: 194 VSVLRESISSTTLE----KCFSIDSYMTT 120
+ VL S LE +C DSYMTT
Sbjct: 474 LDVLASHSSDRQLEVDIPRCHQYDSYMTT 502
>Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical
protein F57A8.5 protein.
Length = 352
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 455 IDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGGSCHNTVKYMVDIYGASVLIL-RT 631
ID I+Q+ + L F ++ T+ K KM+N G + V ++ +Y S L R
Sbjct: 183 IDKKIIFQHTILKLTYFCGVMRTVNEKRSKMMNPGGQEIYPDV--ILQLYEKSKSTLHRI 240
Query: 632 PCSFADQLLSTFIANNYLC 688
C D+LL + + C
Sbjct: 241 CCQPLDKLLEWEVTDEEYC 259
>AL021571-6|CAN99719.1| 142|Caenorhabditis elegans Hypothetical
protein T19A6.3b protein.
Length = 142
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -2
Query: 236 VRIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISC 99
+ IV+F L+ +I + + + ID ++TT +DF C
Sbjct: 42 IAIVIFAVLVGVIGSKYFANELQKIEIFQIPMIDMFLTTHLDFTLC 87
>Z74041-4|CAD56597.1| 394|Caenorhabditis elegans Hypothetical
protein T03F7.7b protein.
Length = 394
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Frame = -1
Query: 282 VEIGYFFAIFYNC----VPRSNRVILQVAQHHKRVRFKRIN-----FVYHIGKMFFHRF 133
++ +FFA F N V ++ + I+Q+ +H K + +++IN +IGK F RF
Sbjct: 33 IDSPFFFARFLNANNGDVEKTRQKIIQLFEHRKLMGYEKINDLDIFTTVNIGKDCFERF 91
>Z74041-3|CAA98522.1| 368|Caenorhabditis elegans Hypothetical
protein T03F7.7a protein.
Length = 368
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Frame = -1
Query: 282 VEIGYFFAIFYNC----VPRSNRVILQVAQHHKRVRFKRIN-----FVYHIGKMFFHRF 133
++ +FFA F N V ++ + I+Q+ +H K + +++IN +IGK F RF
Sbjct: 33 IDSPFFFARFLNANNGDVEKTRQKIIQLFEHRKLMGYEKINDLDIFTTVNIGKDCFERF 91
>AC084161-3|AAK29731.2| 249|Caenorhabditis elegans Hypothetical
protein Y92H12A.3 protein.
Length = 249
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 145 KHFSNVVDEIDSLKTDTFMMLSNLQN--NTIRTGDAVVKNGKKISNL 279
+HFS+ E T+TFM S+LQ +I+ D V KK NL
Sbjct: 140 QHFSSTCVEKKQRMTETFMSRSHLQEAFASIKVNDKAVVLVKKYGNL 186
>U29082-1|AAA68401.1| 251|Caenorhabditis elegans 2 (zwei) ig-domain
protein protein3 protein.
Length = 251
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 139 MEKHFSNVVDEIDSLKTDT---FMMLSNLQNNTIRTGDAV 249
M SN+V EIDS T ++ L++NT+ TG++V
Sbjct: 22 MRAAVSNLVREIDSTHLTTKPSLKIIEGLEDNTVSTGESV 61
>AF456250-1|AAL59608.1| 251|Caenorhabditis elegans secreted
2-immunoglobulin-domainprotein ZIG-3 protein.
Length = 251
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 139 MEKHFSNVVDEIDSLKTDT---FMMLSNLQNNTIRTGDAV 249
M SN+V EIDS T ++ L++NT+ TG++V
Sbjct: 22 MRAAVSNLVREIDSTHLTTKPSLKIIEGLEDNTVSTGESV 61
>AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical
protein Y45G5AM.7 protein.
Length = 433
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +1
Query: 79 GHLNNELQEIKSILVVMYESMEKHFSNVV---DEIDSLKTDTFMMLSNLQNNTIRTGDAV 249
GH+ E E + L E +++ SN+ ++++ D ++NL+ + +
Sbjct: 137 GHIIQEFHERELDLARNVEILQEENSNLTAKNEKLEETVDDLHEKVANLETSNKELTEIN 196
Query: 250 VKNGKKISNLDEKI 291
V N +KISN ++I
Sbjct: 197 VDNERKISNSSDEI 210
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,482,173
Number of Sequences: 27780
Number of extensions: 342198
Number of successful extensions: 1023
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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