Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3j15
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221...    33   0.33 
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619...    30   2.3  
10_08_0742 + 20244984-20247008                                         29   5.3  
07_01_0417 - 3183561-3184640                                           28   7.0  
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335...    28   9.3  
03_05_0490 + 24866418-24867008                                         28   9.3  
03_01_0653 - 4778265-4778902,4779738-4779853,4779982-4780051,478...    28   9.3  

>11_01_0295 +
           2217496-2218092,2218774-2218876,2219140-2219249,
           2219328-2219399,2219653-2219814,2220300-2220510,
           2220613-2220948,2221050-2221162
          Length = 567

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 609 PADLHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSLQE 493
           PADL D + G  G+H  P ST+    G +   A  + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


>02_02_0028 +
           6196453-6196512,6196936-6197320,6197843-6197925,
           6198060-6198183,6198404-6198523,6198595-6198755,
           6198999-6199157,6199272-6199434,6199604-6199729,
           6199775-6199900,6200400-6200764,6201204-6201404,
           6201685-6201794,6201919-6202003,6202553-6202681,
           6202763-6202868,6202984-6203072,6203172-6203474
          Length = 964

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 518 LFLPPAATVSVEGGD--ACAPEYPGTASCKSAGVCSSA 625
           L +PP    +V  GD  + A + P  ASC++AG C++A
Sbjct: 99  LQIPPPERRAVGDGDLLSSAGDLPDAASCRAAGSCAAA 136


>10_08_0742 + 20244984-20247008
          Length = 674

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -2

Query: 615 HTPADLHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSLQECNGVLRLDGTGKVVINLTI 436
           H   DL+  V   S     P +  T   GGK N    S Q     +  DG+ K ++N+TI
Sbjct: 161 HVGVDLNSLVSNVS----EPAAYFTDGGGGKRNLTLESAQPIQAWVDYDGSAK-ILNVTI 215

Query: 435 SRV 427
           + V
Sbjct: 216 APV 218


>07_01_0417 - 3183561-3184640
          Length = 359

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 485 PLHSCSERHAQLFLPPAATVSVEGGDACAPEY 580
           P+HS    HA LF PPAA  +        P Y
Sbjct: 171 PVHSFRHLHATLFPPPAAAAAAARRQRRLPSY 202


>09_04_0161 -
           15232074-15232139,15232299-15232406,15233417-15233506,
           15233617-15233733,15234408-15234527,15234930-15236168
          Length = 579

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 314 TPKSRIRAVMTASMRMIAPVFSTSTSRHFSKAR 216
           TP SR+    T + R + PV +T T  H S  R
Sbjct: 89  TPSSRVSTPSTPASRSVTPVRNTVTEGHKSSRR 121


>03_05_0490 + 24866418-24867008
          Length = 196

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +2

Query: 488 LHSCSERHAQLFLPPAATVSVEGGDACAPEYPGTASCKSAGVCSSAGQQ 634
           LH C E HA+ + P  +       D  A +    A   S    SS+ QQ
Sbjct: 118 LHKCMEAHAEYYHPILSAERAMAADLEAAKADQAAEASSDAAASSSQQQ 166


>03_01_0653 -
           4778265-4778902,4779738-4779853,4779982-4780051,
           4780189-4780402
          Length = 345

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = -2

Query: 525 KNNCAWRSLQECNGVLRLDGTGKVVINLTISRV*LCSKERFHGTMPGDIPPRRCLALPTH 346
           KN   W  L E + +   DG   V+    I     CS +RF      D  P + LALP  
Sbjct: 98  KNGYVWNDLSENDVIYPSDGVEYVLKGSEIFPG--CSSDRFPHLRVTDRSPAKRLALPPS 155

Query: 345 NK 340
           +K
Sbjct: 156 HK 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,212,717
Number of Sequences: 37544
Number of extensions: 433422
Number of successful extensions: 1279
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)