Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3j07
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    41   2e-04
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    29   1.0  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    26   5.6  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   7.4  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 41/166 (24%), Positives = 62/166 (37%), Gaps = 16/166 (9%)
 Frame = +3

Query: 333 SLIVNGFKYNQVD--------DHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIA 488
           +L   GF YN +         D+V C  C     +W +D+     H+T SP C +A  ++
Sbjct: 43  TLATVGFYYNPISESNSEERLDNVTCYMCTKSFYDWEDDDDPLKEHITHSPSCPWAYILS 102

Query: 489 EHESFGDNITINAVLVKEGRPKCVYRCMSNLQSRMDTFVN-FWPAALRDMI----TNIAE 653
              +   N    A+       KC          R  TFV+  WP   R       + +A 
Sbjct: 103 SKNNPNQNPQAAAL------TKC----------REQTFVDKVWPYTNRPDYHCEPSVMAA 146

Query: 654 AGLFYTGRG---DETVCFFCDCCVRDWHINEDAWQRHATENPXMVF 782
           +G  Y       D   C +CD  + DW  ++D +  H       VF
Sbjct: 147 SGFVYNPTADAKDAAHCLYCDINLHDWEPDDDPYTEHKRRRADCVF 192



 Score = 35.9 bits (79), Expect = 0.007
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
 Frame = +3

Query: 564 RCMSNLQSRMDTFVNF-WPAALRDMITNIAEAGLFYTG--------RGDETVCFFCDCCV 716
           R M N   R+DTF    WP A +     +A  G +Y          R D   C+ C    
Sbjct: 17  REMCNYSKRLDTFQKKKWPRA-KPTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSF 75

Query: 717 RDWHINEDAWQRHATENP 770
            DW  ++D  + H T +P
Sbjct: 76  YDWEDDDDPLKEHITHSP 93


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -1

Query: 541 SFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYSIHSSSDQFFISASQY 389
           SF S  ++V+ S  +  + ++    Q    + C Y +H+SS  + I  + Y
Sbjct: 711 SFPSCTVLVVNSELELINEVIGLNRQLDPTIVCGYEVHNSSWGYLIERASY 761


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 550 GLPSFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAY 437
           G PSF   AL  ++ P DS S I     Q   + T  Y
Sbjct: 542 GNPSFVEQALQDLVQPTDSASQIFPLNPQSPSQFTIKY 579


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = +3

Query: 357 YNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLV 536
           ++ + D +  E  E  ++ + E E I+Y     S + AY N I+      + + I+ +  
Sbjct: 504 FSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTN-ISNAMKAVNGLPIHPLFK 562

Query: 537 KEGRPKCVYRCMSNLQ 584
           K        RC   LQ
Sbjct: 563 KSKIRYAPDRCEQELQ 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,376,710
Number of Sequences: 5004
Number of extensions: 70001
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)