Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3j07
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198...    34   0.16 
06_01_0770 - 5756200-5756741,5756790-5757286,5757356-5757782,575...    31   1.1  
04_03_0632 + 18200844-18200970,18201134-18201190,18201370-182014...    31   1.4  
05_04_0402 - 20991628-20991755,20992461-20992578,20992670-209927...    29   4.4  
04_04_0969 - 29787617-29787919,29788019-29788180,29788962-297890...    29   4.4  
11_01_0607 - 4837257-4837447,4837526-4837631,4837913-4838005,483...    28   7.7  
01_06_1512 + 37881055-37881229,37881388-37881444,37881537-378816...    28   7.7  

>01_03_0075 -
           12218501-12218611,12219028-12219267,12219698-12219815,
           12219949-12220016,12220124-12220375,12221362-12221463,
           12221734-12221802,12221892-12221987,12222161-12222208,
           12222352-12222479,12222818-12222896,12223651-12223797,
           12223956-12224022,12224655-12224830,12225588-12225755,
           12225879-12225992,12226657-12226722,12227306-12227524,
           12228142-12228321,12228481-12228584,12228998-12229277,
           12230582-12231004
          Length = 1084

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +3

Query: 381 VCEYCEAEIKNWSEDECIEY-AHVTLSPYCAYANKIAEHESFGDNITINAVLVKEGRPKC 557
           V E  E  +K W E    E  A   LS  C     I   E FGD +   AV+  +G   C
Sbjct: 617 VKESVEVAVKAWGEKSLTELEAEERLSYSCEKGRSILIVE-FGDILPKVAVIANKGLTNC 675

Query: 558 VYRCMSNLQSRMDTFV 605
           +  C+S  +  +D  +
Sbjct: 676 IIGCLSTQEQWLDACI 691


>06_01_0770 -
           5756200-5756741,5756790-5757286,5757356-5757782,
           5757854-5757911
          Length = 507

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 198 DTPPFYFINTRDNFRDNIAEHVFDMLLERHG 290
           D  P  F+NT D+F   I +H+ + + E+HG
Sbjct: 318 DQCPASFLNTSDDFTARIVDHMVEHIKEQHG 348


>04_03_0632 +
           18200844-18200970,18201134-18201190,18201370-18201460,
           18201545-18201705,18202176-18202303,18202386-18202523,
           18202966-18203058,18203546-18203704
          Length = 317

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 437 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 351
           FNT V  P++Y  FTIL   +I ++I++K
Sbjct: 239 FNTAVVSPVYYVMFTIL--TIIANMIMYK 265


>05_04_0402 -
           20991628-20991755,20992461-20992578,20992670-20992762,
           20992841-20992978,20993070-20993197,20993270-20993430,
           20993548-20993638,20993731-20993787,20993986-20994139
          Length = 355

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 437 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAV 330
           FNT V  PI+Y  FT L   ++   I+FK  + Q++
Sbjct: 248 FNTAVVSPIYYAMFTSL--TILASAIMFKDWSGQSI 281


>04_04_0969 -
           29787617-29787919,29788019-29788180,29788962-29789093,
           29789708-29789760,29790518-29791007
          Length = 379

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -1

Query: 553 LGLPSFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYSIHSS 422
           LG    + T  ++ + PN+  ++ ++A++Q G + TC  S + +
Sbjct: 163 LGSSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGA 206


>11_01_0607 -
           4837257-4837447,4837526-4837631,4837913-4838005,
           4838405-4838542,4838651-4838778,4838889-4839049,
           4839145-4839235,4841437-4841602
          Length = 357

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 437 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 351
           FNT V  PI+Y  FT L   ++  +I+FK
Sbjct: 233 FNTAVVSPIYYVMFTSL--TILASVIMFK 259


>01_06_1512 +
           37881055-37881229,37881388-37881444,37881537-37881627,
           37881759-37881919,37882002-37882129,37882215-37882352,
           37882665-37882757,37882858-37882975,37883064-37883194
          Length = 363

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 437 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAVDK 324
           FN  V  PI+Y  FT L   ++   I+FK  + Q+  K
Sbjct: 255 FNAAVVSPIYYAMFTTL--TILASAIMFKDWSGQSASK 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,202,915
Number of Sequences: 37544
Number of extensions: 427999
Number of successful extensions: 1101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)