Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3j07
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z77654-2|CAB01130.1|  308|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U72208-1|AAD00182.1|  308|Caenorhabditis elegans inhibitor of ap...    30   2.3  
U58758-1|AAB93429.2|  819|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z54327-10|CAH04696.1|  596|Caenorhabditis elegans Hypothetical p...    28   7.0  
Z29094-16|CAA82345.2|  184|Caenorhabditis elegans Hypothetical p...    28   9.2  
U55774-2|AAA98009.3|  380|Caenorhabditis elegans Hypothetical pr...    28   9.2  
AL117202-7|CAB55070.1|  302|Caenorhabditis elegans Hypothetical ...    28   9.2  

>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
           protein F46H5.4 protein.
          Length = 2018

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
 Frame = +3

Query: 291 SFENYPIVNTAFINSLIVNGFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCA 470
           + EN P  N  F + +   G K +  D + +C    +E++  +     +  +  L    A
Sbjct: 494 NIENMPSCNLKFSSFIRQEGDKTSDEDIYRIC----SEMRRTNGKVHKKMFNFELELTLA 549

Query: 471 YANKIAEHESFGDNITINAV-LVKEGRPKCVYRCMSNLQSRMDTFV 605
            +NK  E++S G N+T+N+  ++ E     +Y+   N   +   FV
Sbjct: 550 GSNKSKEYQSHGSNLTLNSERVIHEAMEIPIYQASLNKSYKNVIFV 595


>Z77654-2|CAB01130.1|  308|Caenorhabditis elegans Hypothetical
           protein C50B8.2 protein.
          Length = 308

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 645 IAEAGLFYTGRGDETVCFFCDCCVRDWHINE--DAWQRHATENPXMVFCIVGE 797
           +A AG + T   +      C  C+ + +  +  D W++H + +P   F ++GE
Sbjct: 49  LARAGFYSTASPEFPASAKCPFCMLEINFEQCDDPWEKHKSGSPHCEFVMIGE 101


>U72208-1|AAD00182.1|  308|Caenorhabditis elegans inhibitor of
           apoptosis homolog protein.
          Length = 308

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 645 IAEAGLFYTGRGDETVCFFCDCCVRDWHINE--DAWQRHATENPXMVFCIVGE 797
           +A AG + T   +      C  C+ + +  +  D W++H + +P   F ++GE
Sbjct: 49  LARAGFYSTASPEFPASAKCPFCMLEINFEQCDDPWEKHKSGSPHCEFVMIGE 101


>U58758-1|AAB93429.2|  819|Caenorhabditis elegans Hypothetical
           protein ZK1127.7 protein.
          Length = 819

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +3

Query: 591 MDTFVNFWPAALR-----DMITNIAEAGLFYTGRGDETVCFFCDCCVRDWHINEDAWQRH 755
           ++ F  FWPA  +     D IT IA+A       G E V F+      +W +N D W+ +
Sbjct: 165 LNFFHRFWPALFKRDFVEDFITPIAKAT-----EGKEEVSFYSLPEYSEWRMNTDNWKSY 219


>Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical
           protein W04G3.4 protein.
          Length = 588

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 26  ISNIFEYEFVVLEHNLSTVHVINAETKTKLGHINVSLNQNDPNV 157
           +SNI  Y  V+  HN  T+  +N   KT   ++ + L  +  N+
Sbjct: 484 VSNIHSYVLVIQNHNNFTIKDVNLSLKTNDKNVIIRLQDSVNNL 527


>Z54327-10|CAH04696.1|  596|Caenorhabditis elegans Hypothetical
           protein C26D10.7 protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = -3

Query: 740 VFVNMPITYATIAKETYSFVSATRVKKSRFRNVRNHV---TQCGRPKINKRIHTRL*IGH 570
           V +  P TYAT     Y FV+   V+K +  N+R+ +   TQ       +RI   +  G 
Sbjct: 202 VKLEQPTTYATFVYAVYDFVNGYWVEKEK-TNIRSQLDGETQDRHLDKKRRISLAVTAGG 260

Query: 569 ASVHTLGSAFFY 534
            + H L +  ++
Sbjct: 261 RASHQLETGMYF 272


>Z29094-16|CAA82345.2|  184|Caenorhabditis elegans Hypothetical
           protein C07A9.9 protein.
          Length = 184

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = +3

Query: 354 KYNQVDDHVV----CEYCEAEIKNWSEDECIEYAHVTLSPYCAY 473
           +Y  VDD V     C +C      W  D+C +  H +L  +C Y
Sbjct: 59  EYQYVDDDVPNSERCHFCMKRKGRWMGDDCSD--HSSLCKHCCY 100


>U55774-2|AAA98009.3|  380|Caenorhabditis elegans Hypothetical
           protein F35G8.1 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/70 (24%), Positives = 34/70 (48%)
 Frame = -3

Query: 791 DNTKYHXRVFGGVSLPGVFVNMPITYATIAKETYSFVSATRVKKSRFRNVRNHVTQCGRP 612
           D+ K H R+F G+S+  +   +P+   ++     + +  T+ KK +     + VTQ    
Sbjct: 178 DHDKQHYRLFYGLSVLVIRSAIPLVLISLCHWRIAVILNTQTKKFQTLRSASTVTQSTDI 237

Query: 611 KINKRIHTRL 582
           +  +R+ T L
Sbjct: 238 RRKQRLQTLL 247


>AL117202-7|CAB55070.1|  302|Caenorhabditis elegans Hypothetical
           protein Y47D3A.10 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 790 TIQNTIXGFSVACRCQASSLICQSRTQQSQKKHTVSSPRPV*KSPASA 647
           TIQN   G S   + Q    I     Q ++ +HT  +PR +  +P S+
Sbjct: 132 TIQNVTTGKSTEFQFQQMEFIAVKSYQSARIRHTKRAPRKMNLAPGSS 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,915,392
Number of Sequences: 27780
Number of extensions: 402778
Number of successful extensions: 1321
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)