Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3j03
         (727 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SI60 Cluster: Chromosome 5 SCAF14581, whole genome sh...    38   0.33 
UniRef50_UPI00006A16D5 Cluster: UPI00006A16D5 related cluster; n...    36   1.3  
UniRef50_Q0URD4 Cluster: Predicted protein; n=1; Phaeosphaeria n...    34   4.1  
UniRef50_Q5F7X7 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  

>UniRef50_Q4SI60 Cluster: Chromosome 5 SCAF14581, whole genome shotgun
            sequence; n=3; Clupeocephala|Rep: Chromosome 5 SCAF14581,
            whole genome shotgun sequence - Tetraodon nigroviridis
            (Green puffer)
          Length = 991

 Score = 37.5 bits (83), Expect = 0.33
 Identities = 24/71 (33%), Positives = 32/71 (45%)
 Frame = -2

Query: 654  FVTPSIC*PALLHTPADLYDAVPGYSGAHASPPLTETVAAGGKNNCAWRSVQECDSVLRL 475
            F TP+   P     P  L  A P YSG H SPPL    + G  +       Q  DS+ +L
Sbjct: 850  FFTPTRSTP---EEPMHLSPATPHYSGHH-SPPLLNQTSNGNPSQAVLEFAQYLDSLFKL 905

Query: 474  DGTGKVIINLT 442
            DG+    + L+
Sbjct: 906  DGSSSPPLELS 916


>UniRef50_UPI00006A16D5 Cluster: UPI00006A16D5 related cluster; n=1;
           Xenopus tropicalis|Rep: UPI00006A16D5 UniRef100 entry -
           Xenopus tropicalis
          Length = 327

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 268 NILIDAVMTARIFDLGVCCNYHRRDRAVCRKCKTP--TPQDVSWHSSVD 408
           NILID+   A++ D G+C   HRRD  V   C T   T  +V  ++S D
Sbjct: 179 NILIDSTGYAKLADFGLCVKVHRRDGRVTGCCGTRHYTAPEVYIYNSYD 227


>UniRef50_Q0URD4 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 246

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 434 REIVRLMITLPVPSNRNTLSHSCTERHAQLFLP 532
           R  V L + LPVP + NT +H C  RH   + P
Sbjct: 81  RRRVHLPLALPVPQSSNTTAHPCCARHTPNWFP 113


>UniRef50_Q5F7X7 Cluster: Putative uncharacterized protein; n=1;
           Neisseria gonorrhoeae FA 1090|Rep: Putative
           uncharacterized protein - Neisseria gonorrhoeae (strain
           ATCC 700825 / FA 1090)
          Length = 114

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 521 LFLPPAATVSVKGGDACAPEYPGTASYKSAGVCSS 625
           L LPP+ T+   G D  A  +P    Y S+G+CSS
Sbjct: 26  LILPPSRTLVQTGTDDTARAFPVFTGYPSSGLCSS 60


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,291,554
Number of Sequences: 1657284
Number of extensions: 14332517
Number of successful extensions: 35172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35161
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)