Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3j03
         (727 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   5.8  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    21   7.7  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    21   7.7  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 474 LIAIRCRTLVPNATRSYFCHQQQR 545
           +IA    TL+   T +Y+ H+Q+R
Sbjct: 385 IIAPLIATLIATVTVNYYRHKQKR 408


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 375 RRCLALSTHSTIATMIIATNS*IKNSSGHDSVDENVRACIFYI 247
           R  L ++T  T+ T++ +TN+ +   S   S+D  +  C   +
Sbjct: 99  RVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMV 141


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 676 LQCSNNPVRHA 644
           +QCSN+P+R A
Sbjct: 60  IQCSNSPLRKA 70


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,083
Number of Sequences: 336
Number of extensions: 3720
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)