Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3j03
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    28   1.6  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   2.7  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   4.8  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   8.3  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   8.3  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    25   8.3  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = +2

Query: 416 LEHNYTREIVRLMITLPVPSNRNTLSHSCTERHAQLFLPPAATVSVKGGDACAPEYPGTA 595
           L H+ T +     + + +PS   T +++ +  H+ L  P A+T++     A     P  A
Sbjct: 401 LNHSVTGDGEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLA 460

Query: 596 SYKSA 610
           ++ S+
Sbjct: 461 NHLSS 465


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
 Frame = +2

Query: 404  WTRCLEHNYTREI--VRLMITLPVPSNRNTLSHSCTERHAQLFLPPAATVSVKGGDACAP 577
            W   +   Y+  I  +R +I   +P N   L           FL P+ T +V GG+    
Sbjct: 1016 WNAPIAITYSSVIYCLRSIINQDIPLNEGCLKPIEIRIPPSCFLNPSETAAVVGGNVLTS 1075

Query: 578  EYPGTASYKSAGVCSSAGQQMDGVT 652
            +       K+  +C+++   M+ +T
Sbjct: 1076 QRITDVILKAFSICAASQGCMNNLT 1100


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = -2

Query: 354 THSTIATMIIATNS*IKNSSGHDSVDENVRACIFYIDVPSLFKSTWFYPTS 202
           +HS+ +++ I  +S + N++ H SV ++ ++  F + VPS   ST  Y TS
Sbjct: 474 SHSSASSLPITPSSYLSNTTLHSSV-QSSQSSQFTVSVPS---STQSYSTS 520


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +1

Query: 322 CNYHRRDRAVCRKCKTPTPQDVSWHSSVDPLFRT*LYS*DREINDHFTGTV*SQY 486
           C  +    A  +   + +P ++S HS+  PL  T + S   +  D F+G+  S +
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -2

Query: 612 PADLYDAVPGYSGAHASPPLTETVAAGGKNNCAWRSVQECDSVLRLD--GTGKVIINLTI 439
           P+D   A P YS + +S P+     +G          Q+  S+ +LD  G+G  +    I
Sbjct: 167 PSDTSVASPDYSHSQSSSPIANYQESGNSEEPHKAEEQQQLSIYQLDNPGSGNYVWETVI 226

Query: 438 S 436
           S
Sbjct: 227 S 227


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 618 HTPADLYDAVPGYSGAHASPPLTETV 541
           HT A L  + PGY G   S  LTE V
Sbjct: 575 HTIARLIGSPPGYIGYEESGELTEAV 600


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,108
Number of Sequences: 5004
Number of extensions: 59545
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)