Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3j03
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0436 - 19076486-19076609,19076860-19076944,19077321-190774...    30   1.6  
11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221...    30   1.6  
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    29   2.8  
10_08_0631 - 19435796-19436452,19437237-19438130                       28   6.6  
10_08_0742 + 20244984-20247008                                         28   8.7  
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221...    28   8.7  
03_05_1070 + 30125131-30127029                                         28   8.7  

>12_02_0436 -
           19076486-19076609,19076860-19076944,19077321-19077486,
           19078213-19078889,19079372-19079475,19079582-19079817
          Length = 463

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +1

Query: 259 TGANILIDAVMTARIFDLGVCCNYHRRDRAVCRKCKTPTP 378
           T +NILID   TAR+ D G   ++ RR R   R+C +P P
Sbjct: 179 TASNILIDNDFTARLGDFGY--SWSRRFR---RRCTSPAP 213


>11_01_0295 +
           2217496-2218092,2218774-2218876,2219140-2219249,
           2219328-2219399,2219653-2219814,2220300-2220510,
           2220613-2220948,2221050-2221162
          Length = 567

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 612 PADLYDAVPGYSGAHASPPLTETVAAGGKNNCAWRSVQE 496
           PADL D + G  G+H  P  T+    G +   A  + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 416 LEHNYTREIVRLMITLPVPSNRNTLS 493
           L+H  TR+++ L +  PV +N+N LS
Sbjct: 147 LDHRQTRDLISLFLPAPVRANQNKLS 172


>10_08_0631 - 19435796-19436452,19437237-19438130
          Length = 516

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -1

Query: 724 EQIRQKAPPLSKFR*HLQCSNNPVRHAVHLLTSTATHTRRFV*RCSRVLRC 572
           ++I+  A PLSK R HL CSN P   +  + T T  + R       +V++C
Sbjct: 466 DEIQVSASPLSK-RWHLVCSNIPNNISYLVSTFTLANCRTTDIGTKKVMQC 515


>10_08_0742 + 20244984-20247008
          Length = 674

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = -2

Query: 618 HTPADLYDAVPGYSGAHASPPLTETVAAGGKNNCAWRSVQECDSVLRLDGTGKVIINLTI 439
           H   DL   V   S     P    T   GGK N    S Q   + +  DG+ K I+N+TI
Sbjct: 161 HVGVDLNSLVSNVS----EPAAYFTDGGGGKRNLTLESAQPIQAWVDYDGSAK-ILNVTI 215

Query: 438 SRV 430
           + V
Sbjct: 216 APV 218


>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
            17722189-17722332,17722415-17722722,17723433-17723568,
            17723748-17723841,17723976-17724073,17724951-17725004,
            17725704-17726150,17726227-17726393,17726540-17726663,
            17726751-17726837,17727000-17727056,17727492-17727560,
            17727664-17727811,17727893-17728116,17728842-17728958,
            17729649-17729742,17730573-17730640,17733278-17733334,
            17733412-17733511,17733638-17733674,17734077-17734200,
            17735254-17735322,17735371-17735410,17735905-17735993,
            17736849-17736953,17737033-17737104,17737814-17737936,
            17738049-17738117,17738966-17739059,17739145-17739231,
            17740184-17740351,17740436-17740552,17741484-17741590,
            17741671-17741803,17742564-17742667,17743504-17743629,
            17744148-17744216,17744996-17745064,17745278-17745358,
            17745444-17745533,17745896-17746000,17747803-17747873,
            17748320-17748461,17749266-17749330,17750081-17750168,
            17750236-17750325,17750437-17750673,17751064-17751170,
            17751625-17751832,17752376-17752546
          Length = 2366

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 342  IATMIIATNS*IKNSSGHDSVDENVRACIFY 250
            +AT I    S   +SSGHD VD N    I+Y
Sbjct: 1233 LATSIARNTSEGLSSSGHDPVDSNAENDIYY 1263


>03_05_1070 + 30125131-30127029
          Length = 632

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 540 AAGGKNNCAWRSVQECDS-VLRLD 472
           A GG+   AWRS    DS VLRLD
Sbjct: 521 AGGGRGEAAWRSTATQDSQVLRLD 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,619,790
Number of Sequences: 37544
Number of extensions: 407162
Number of successful extensions: 1472
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)