Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3j03
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    30   1.5  
L29440-1|AAA98752.1|  570|Caenorhabditis elegans endoprotease pr...    29   4.5  
AF039719-2|AAB96757.1|  827|Caenorhabditis elegans Blistered cut...    29   4.5  
AF039719-1|AAB96754.1|  942|Caenorhabditis elegans Blistered cut...    29   4.5  
U22833-2|AAA64322.2|  707|Caenorhabditis elegans Temporarily ass...    28   5.9  

>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 618 HTPADLYDAVPGYSGAHASPPLTETVAAGGKNNCAWRSVQE 496
           + P   Y+ VP Y       P TE+    G ++  W SV+E
Sbjct: 25  YVPPQGYEGVPRYRAIDPDRPKTESSEMSGADHLEWESVKE 65


>L29440-1|AAA98752.1|  570|Caenorhabditis elegans endoprotease
           protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -2

Query: 555 LTETVAAGGKNNCAWRSVQECDSVLRLDGTGKVIINLTISRV*LCSKQRVHGTMPGDIL 379
           LT+T+    K    ++ VQ+CD    LDG       +  S    C+K  V  T PG +L
Sbjct: 326 LTQTLR--NKGGSGFKCVQKCDDTYYLDGDK---CKMCSSHCHTCTKAEVCETCPGSLL 379


>AF039719-2|AAB96757.1|  827|Caenorhabditis elegans Blistered
           cuticle protein 4, isoformc protein.
          Length = 827

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -2

Query: 555 LTETVAAGGKNNCAWRSVQECDSVLRLDGTGKVIINLTISRV*LCSKQRVHGTMPGDIL 379
           LT+T+    K    ++ VQ+CD    LDG       +  S    C+K  V  T PG +L
Sbjct: 698 LTQTLR--NKGGSGFKCVQKCDDTYYLDGDK---CKMCSSHCHTCTKAEVCETCPGSLL 751


>AF039719-1|AAB96754.1|  942|Caenorhabditis elegans Blistered
           cuticle protein 4, isoformd protein.
          Length = 942

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -2

Query: 555 LTETVAAGGKNNCAWRSVQECDSVLRLDGTGKVIINLTISRV*LCSKQRVHGTMPGDIL 379
           LT+T+    K    ++ VQ+CD    LDG       +  S    C+K  V  T PG +L
Sbjct: 698 LTQTLR--NKGGSGFKCVQKCDDTYYLDGDK---CKMCSSHCHTCTKAEVCETCPGSLL 751


>U22833-2|AAA64322.2|  707|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 161 protein.
          Length = 707

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 265 ANILIDAVMTARIFDLGVCCNYHRR 339
           ANIL+D     R+ DLG+ C+Y ++
Sbjct: 322 ANILLDENGHVRVSDLGLACDYSKK 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,891,224
Number of Sequences: 27780
Number of extensions: 356643
Number of successful extensions: 911
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)