Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3j03
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   3.9  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   5.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.0  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 139 LGQFCVIYFFLLTTSLLV 192
           +G+  +I FF+LTT L++
Sbjct: 1   MGRITIIRFFVLTTMLMM 18


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 268 NILIDAVMTARIFDLGVCCNYHRRDRAVCRKCKTP 372
           N+L+D     +I D G+C      D+     C TP
Sbjct: 115 NVLLDQDGHIKIADFGMCKEGISGDKTTKTFCGTP 149


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 375 RRCLALSTHSTIATMIIATNS*IKNSSGHDSVDENVRACIFYI 247
           R  L ++T  T+ T++ +TN+ +   S   S+D  +  C   +
Sbjct: 252 RVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMV 294


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 375 RRCLALSTHSTIATMIIATNS*IKNSSGHDSVDENVRACIFYI 247
           R  L ++T  T+ T++ +TN+ +   S   S+D  +  C   +
Sbjct: 252 RVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMV 294


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 375 RRCLALSTHSTIATMIIATNS*IKNSSGHDSVDENVRACIFYI 247
           R  L ++T  T+ T++ +TN+ +   S   S+D  +  C   +
Sbjct: 191 RVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMV 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,273
Number of Sequences: 438
Number of extensions: 4173
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)