Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3i24
(351 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 117 5e-28
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 116 1e-27
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 25 2.6
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 25 4.5
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 24 6.0
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 24 6.0
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 6.0
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 24 7.9
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 24 7.9
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 24 7.9
>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 117 bits (282), Expect = 5e-28
Identities = 51/84 (60%), Positives = 59/84 (70%)
Frame = +2
Query: 32 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIXKSXCAQCGYPAAKLRSYHWSVKAXXXXXXX 211
MTKGT SFG R NK+HT+CRRCG+ S+HI KS CA CGYPAAK RSY+W KA
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 212 XXXMRHLKIVRRRFRNGFKEGKPT 283
M +LK V R F+NGF+ GKPT
Sbjct: 61 TGRMSYLKKVHRSFKNGFRAGKPT 84
>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 91
Score = 116 bits (279), Expect = 1e-27
Identities = 52/91 (57%), Positives = 60/91 (65%)
Frame = +2
Query: 32 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIXKSXCAQCGYPAAKLRSYHWSVKAXXXXXXX 211
MTKGT SFG R NK+HT+CRRCG+ S+HI KS CA CGYPAAK RSY+W KA
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 212 XXXMRHLKIVRRRFRNGFKEGKPTPPKKAVA 304
M +LK V R F+NGF+ GKP A A
Sbjct: 61 TGRMSYLKKVHRSFKNGFRSGKPAAAVAASA 91
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 2.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 240 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYP 142
T+F + +PV+ + FT+ W N A +P
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFP 229
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 24.6 bits (51), Expect = 4.5
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 105 DLPHLLHNVWVLFRRLPKLEVPF-VILSLLTIRKSN 1
++P L H++W++ + KL + F ILS + I N
Sbjct: 710 EIPSLFHSIWIMTGKGLKLWLSFSEILSSVLINTKN 745
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 24.2 bits (50), Expect = 6.0
Identities = 10/28 (35%), Positives = 10/28 (35%)
Frame = +2
Query: 68 NKTHTLCRRCGRSSYHIXKSXCAQCGYP 151
N H C C Y S C QC P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 24.2 bits (50), Expect = 6.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 138 WAHXDX*M*YDDLPHLLHNVWVLFRRLPKLEVPFVI 31
W+H D D H LHN W R K + F++
Sbjct: 158 WSHDDLNELVDKSYHNLHNAWSQLSREAKDQWGFLL 193
>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 103
Score = 24.2 bits (50), Expect = 6.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -3
Query: 340 IFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 245
IFIYL+ + Y +L R F +KT IT+ P
Sbjct: 17 IFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 107 SYHIXKSXCAQCGYPAAKLR 166
+YH+ K C + G P A L+
Sbjct: 1346 NYHVLKDWCLESGVPEAYLQ 1365
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 23.8 bits (49), Expect = 7.9
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = +1
Query: 136 PMWISCSKITILPLVSEG*AQEDYW 210
P W+SC+++ +L + +D W
Sbjct: 272 PTWLSCARLPLLKAFKDVIGLKDVW 296
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 38 KGTSSFGKRRNKTHTLCRRCGRSS 109
KGTS R+ T+ L R C +SS
Sbjct: 214 KGTSGGQATRHLTYALSRTCSQSS 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,373,879
Number of Sequences: 5004
Number of extensions: 23684
Number of successful extensions: 48
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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