Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i24
         (351 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    23   2.5  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            22   5.8  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    22   7.6  

>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 298 SLLGRRWFPFFKTITEAP 245
           S  G+ W+  +K I EAP
Sbjct: 251 SFTGKMWYQVYKQIREAP 268


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -2

Query: 107  TIYHIFCITYGSYFGAYRSLRYPSSSCHS 21
            TI   + I Y    G   SLRYP  S  S
Sbjct: 2062 TINRTYSIDYEYENGKLHSLRYPMDSAAS 2090


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = +2

Query: 59  KRRNKTHTLCRRCGRSSYHIXKSXCAQCGYPAAKLRSY 172
           KR    H   RRC RS      +    C Y   + R Y
Sbjct: 418 KRAAYRHYQTRRCQRSRSIYFDTHSLYCSYNRFRYRRY 455


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 347,155
Number of Sequences: 2352
Number of extensions: 5692
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 25364985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)