Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i20
         (183 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    27   0.43 
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   1.3  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   1.7  
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom...    24   2.3  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    23   4.0  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    23   4.0  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    23   5.3  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    23   7.0  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    22   9.3  

>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 172 PRVGVDQAHNHAVDFESQHAIVLYSFSGRYTFEYNKH 62
           P + ++Q ++HAVD+ S   ++    +G   F  N H
Sbjct: 258 PEILLEQPYDHAVDWWSMGILIFDLLTGSPPFTANNH 294


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 56  KSMFI--VFKGITPTKTVXDNGMLRFEVDSMIVCLIDPN 166
           K+M+I  V + ITP   + +N M  +E + ++  + DPN
Sbjct: 156 KNMYIRSVTRVITPGTLIDENFMNPYESNYILTVVFDPN 194


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 163 GVDQAHNHAVDFESQHAIVLYSFSGRYTFEYNKHGFKFL 47
           G+D   NH  D   +   VL+ +S + TF Y K   K L
Sbjct: 287 GMDNKGNHGGDSFDEINSVLWMYSKKPTFGYLKQPGKVL 325


>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 38  FDIKEFKSMFIVFKGITPTKTVXD 109
           + I   +S F+ F GITP + + D
Sbjct: 72  YTISLLQSNFLFFSGITPIRAIFD 95


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 160 VDQAHNHAVDFESQHAIVLYSFSGRYTFEYNKHG 59
           +D A   AVD E+      + F  +Y F++  HG
Sbjct: 22  LDGAKQGAVDSETMIQYYRHLFPWKYLFQWLNHG 55


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 17  MTRGTANFDIKEFKSMFIVFK 79
           +T GT++ D+K F+S F++ K
Sbjct: 733 ITLGTSSSDVKAFESNFLLKK 753


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -3

Query: 166  VGVDQAHNHAVDFESQHAIVLYSFSGRYTFEYNKHGFK 53
            VG+      A    + +AI  +SF GR    + +  +K
Sbjct: 1050 VGIKGVEGQAASMSADYAIGQFSFLGRLLLVHGRWDYK 1087


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 171 PVLGSIKHTIMLSTSNRNMPLSXTVLV-GVIPLNTINMDLN 52
           PV+G+ KH +  +++ ++M L  ++ V     L  ++  LN
Sbjct: 114 PVVGTKKHAVYATSAPKSMSLQDSLSVPSATALADVSSSLN 154


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 41  DIKEFKSMFIVFKGITPT 94
           DI+   S  IVF GI P+
Sbjct: 283 DIRRIMSKLIVFNGILPS 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 751,260
Number of Sequences: 5004
Number of extensions: 11297
Number of successful extensions: 31
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)