Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i20
         (183 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999           26   4.9  
07_01_0159 - 1116786-1117153,1117251-1119936                           26   4.9  
07_03_0305 - 16475127-16476017,16476058-16478067                       25   6.5  
02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459     25   6.5  
04_01_0039 + 455760-457631                                             25   8.6  
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203     25   8.6  

>08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999
          Length = 698

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
 Frame = -3

Query: 106 LYSFSGRYTFEYNKHGFK-----FLDIKVCG 29
           LYS +GR TF  NK GF+      LDI +CG
Sbjct: 492 LYSSNGRITFRGNK-GFRCLKYFSLDIDLCG 521


>07_01_0159 - 1116786-1117153,1117251-1119936
          Length = 1017

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 168 VLGSIKHTIMLSTSNRNMPLSXTVLVGVIPLNTINM-DLNSLI 43
           ++G I   I L ++ RNM L    L G+IP    N+  LN++I
Sbjct: 163 LVGDITPNIALLSNLRNMRLHSNNLTGIIPPEIGNITSLNTVI 205


>07_03_0305 - 16475127-16476017,16476058-16478067
          Length = 966

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 162 GSIKHTIMLSTSNRNMPLSXTVLVGVIPLN 73
           G I   I + T+ +N+ LS   L GVIP N
Sbjct: 787 GHIPEDISMLTALKNLNLSWNHLSGVIPTN 816


>02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459
          Length = 867

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 168 VLGSIKHTIMLSTSNRNMPLSXTVLVGVIP 79
           + GSI  +I   TS +NM LS   ++G IP
Sbjct: 314 ITGSIPESIGNLTSLQNMDLSNNRIIGPIP 343


>04_01_0039 + 455760-457631
          Length = 623

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 163 GVDQAHNHAVDFESQHAIVLYSFS 92
           GVD  H+HAV+ + +H I +Y  +
Sbjct: 405 GVDAMHSHAVELK-KHGIEMYKLA 427


>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
          Length = 740

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 171 PVLGSIKHTIMLSTSNRNMPLSXTVLVGV 85
           P + +    I LSTS RN+  S T  +G+
Sbjct: 708 PSMAADSDQIELSTSTRNISFSDTAYIGI 736


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,045,636
Number of Sequences: 37544
Number of extensions: 77489
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 14,793,348
effective HSP length: 40
effective length of database: 13,291,588
effective search space used: 265831760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)