Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i20
         (183 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50191-8|AAK31551.3|  296|Caenorhabditis elegans Hypothetical pr...    28   0.76 
AF482952-1|AAL89754.1|  668|Caenorhabditis elegans CUP-5L protein.     27   2.3  
AF338583-1|AAK19624.1|  611|Caenorhabditis elegans CUP-5 protein.      27   2.3  
AC006679-13|AAL38965.1|  644|Caenorhabditis elegans Coelomocyte ...    27   2.3  
AC006679-12|AAM15596.1|  611|Caenorhabditis elegans Coelomocyte ...    27   2.3  
AC006679-11|AAP82643.1|  668|Caenorhabditis elegans Coelomocyte ...    27   2.3  
AC006679-10|AAP82642.1|  619|Caenorhabditis elegans Coelomocyte ...    27   2.3  
U29382-4|AAG00002.2|  324|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AF098501-7|AAC67402.1|  199|Caenorhabditis elegans Hypothetical ...    25   9.4  
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    25   9.4  

>U50191-8|AAK31551.3|  296|Caenorhabditis elegans Hypothetical
           protein T14B4.3 protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 166 VGVDQAHNHAVDFESQHAIVLYSFSGRYTFEYNKHGFKFLD 44
           VG  QA      F+   A+++    G   F+Y+ H F F D
Sbjct: 55  VGAHQAIGDEKLFQKPKALLIIVIDGLENFDYDGHAFNFTD 95


>AF482952-1|AAL89754.1|  668|Caenorhabditis elegans CUP-5L protein.
          Length = 668

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 5   SNVTMTRGTANFDIKEFK 58
           SNVT+   T NFDI+E K
Sbjct: 195 SNVTVNNNTYNFDIREVK 212


>AF338583-1|AAK19624.1|  611|Caenorhabditis elegans CUP-5 protein.
          Length = 611

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 5   SNVTMTRGTANFDIKEFK 58
           SNVT+   T NFDI+E K
Sbjct: 195 SNVTVNNNTYNFDIREVK 212


>AC006679-13|AAL38965.1|  644|Caenorhabditis elegans Coelomocyte
           uptake defective protein5, isoform b protein.
          Length = 644

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 5   SNVTMTRGTANFDIKEFK 58
           SNVT+   T NFDI+E K
Sbjct: 195 SNVTVNNNTYNFDIREVK 212


>AC006679-12|AAM15596.1|  611|Caenorhabditis elegans Coelomocyte
           uptake defective protein5, isoform a protein.
          Length = 611

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 5   SNVTMTRGTANFDIKEFK 58
           SNVT+   T NFDI+E K
Sbjct: 195 SNVTVNNNTYNFDIREVK 212


>AC006679-11|AAP82643.1|  668|Caenorhabditis elegans Coelomocyte
           uptake defective protein5, isoform d protein.
          Length = 668

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 5   SNVTMTRGTANFDIKEFK 58
           SNVT+   T NFDI+E K
Sbjct: 195 SNVTVNNNTYNFDIREVK 212


>AC006679-10|AAP82642.1|  619|Caenorhabditis elegans Coelomocyte
           uptake defective protein5, isoform c protein.
          Length = 619

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 5   SNVTMTRGTANFDIKEFK 58
           SNVT+   T NFDI+E K
Sbjct: 205 SNVTVNNNTYNFDIREVK 222


>U29382-4|AAG00002.2|  324|Caenorhabditis elegans Hypothetical
           protein R03H10.6 protein.
          Length = 324

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 44  IKEFKSMFIVFKGITPTK 97
           ++EF++  + FKGI PT+
Sbjct: 302 VEEFQNKIVAFKGIVPTQ 319


>AF098501-7|AAC67402.1|  199|Caenorhabditis elegans Hypothetical
           protein H28G03.3 protein.
          Length = 199

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 169 RVGVDQAHNHAVDFESQHAIVLYSFSGRYTFEYNK 65
           R  V  A+N AV   S   I  + +SG  T EY +
Sbjct: 69  RYNVGPANNFAVQTPSPAQIAAWGYSGVSTVEYEQ 103


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
            protein 10 protein.
          Length = 2302

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 135  STSNRNMPLSXTVLVGVIPL 76
            S+SN ++PL+  +L+GV+ L
Sbjct: 2213 SSSNSDIPLNTLILIGVVGL 2232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,233,738
Number of Sequences: 27780
Number of extensions: 66531
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 12,740,198
effective HSP length: 41
effective length of database: 11,601,218
effective search space used: 220423142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)