Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i20
         (183 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   0.59 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   1.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   3.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   3.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    19   4.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    19   4.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   5.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    19   5.5  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    19   5.5  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    19   5.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   7.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    19   7.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   7.2  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 0.59
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 100 CXGQWHVAIRSRQHDCVLDRPQHGAAV 180
           C G + V + S +    LD P H A +
Sbjct: 181 CIGAFDVTLESGERVTFLDTPGHAAFI 207


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -1

Query: 168 VLGSIKHTIMLSTSNRNMPLSXTVLVGVIPLNTINMDLNSLISKFAVP 25
           +LGSI  ++ L    R      ++      +NT++ + +SL   F+ P
Sbjct: 10  LLGSIARSLSLDRRARRGAADLSLAGNATKVNTVHEEESSLNDLFSGP 57


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 126 NRNMPLSXTVLVGVIPLNTI 67
           +RN  +S   ++ VIPL+ I
Sbjct: 354 SRNFTMSEDGMIEVIPLSAI 373


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 126 NRNMPLSXTVLVGVIPLNTINMDLNSLIS 40
           N  + ++   L G+  L T N   NSL S
Sbjct: 247 NAIVEIAGDALTGLTVLRTFNASYNSLDS 275



 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 73   YNKHGFKFLDIK 38
            Y+K+G +FL  K
Sbjct: 1027 YSKYGLRFLRAK 1038


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +2

Query: 140 MIVCLIDP 163
           +++CLIDP
Sbjct: 89  LVICLIDP 96


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 163 GVDQAHNHAVDFESQHAIVLYS 98
           GV    NH V   + HAI+ +S
Sbjct: 272 GVYHLDNHHVHHANHHAILGHS 293


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 93  VGVIPLNTINMDL 55
           +G +P+N IN+ L
Sbjct: 72  IGSVPVNNINLIL 84


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/18 (33%), Positives = 9/18 (50%)
 Frame = -2

Query: 167 CWGRSSTQSCCRLRIATC 114
           CW R   ++  R+  A C
Sbjct: 392 CWSRDFRRAFVRILCACC 409


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding
          protein ASP4 protein.
          Length = 136

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 32 ANFDIKEFKSMF 67
          A FD+ + KSM+
Sbjct: 30 AGFDLSDLKSMY 41


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding
          protein ASP4 protein.
          Length = 136

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 32 ANFDIKEFKSMF 67
          A FD+ + KSM+
Sbjct: 30 AGFDLSDLKSMY 41


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 143 IVCLIDPNTGPLS 181
           + C  DPN  P+S
Sbjct: 51  LFCEYDPNVRPIS 63


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -1

Query: 126 NRNMPLSXTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLLD 1
           NR+  +   + +GV  L+T   D  +L       R  ++ LD
Sbjct: 6   NRDEDILPGITIGVHILDTCGRDTYALNQSLHFVRASLSNLD 47


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -1

Query: 126 NRNMPLSXTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLLD 1
           NR+  +   + +GV  L+T   D  +L       R  ++ LD
Sbjct: 96  NRDEDILPGITIGVHILDTCGRDTYALNQSLHFVRASLSNLD 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,803
Number of Sequences: 438
Number of extensions: 699
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 40
effective length of database: 128,823
effective search space used:  2576460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)