Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3i16
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 31 0.15
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 30 0.26
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 30 0.26
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 29 0.46
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 29 0.80
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 27 1.8
SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|... 27 2.4
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 27 3.2
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||... 25 7.4
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 9.8
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc... 25 9.8
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 9.8
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 31.1 bits (67), Expect = 0.15
Identities = 21/84 (25%), Positives = 39/84 (46%)
Frame = +1
Query: 388 VLKIHKPIDEVLSRDPALIGYDTSKYLFTDITFGIANEERIIIERDTDGTLRSCDHDIRK 567
V+ + P+ + +R P L+ T D+ + EE ++ E+ D S D +
Sbjct: 271 VIGLEPPLRQGQTRYPFLV---TQFVRDEDMEVDLNIEETVLKEKYADKVKASYDQPAFE 327
Query: 568 KLNQVYFPITGRKIREPHMFSDEE 639
++Q++ +TGRK+ P F E
Sbjct: 328 VVSQIFRGLTGRKVTTPAEFLSHE 351
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 30.3 bits (65), Expect = 0.26
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -2
Query: 134 LDITRTHGSYFIINVLTCFVAIFCNSKDILA 42
L ++R H YFI VL CF A FC + ILA
Sbjct: 86 LGLSRLHVFYFIRGVLACFSA-FCETNLILA 115
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 30.3 bits (65), Expect = 0.26
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +1
Query: 502 ERIIIERDTDGTLRSCDHDIRK-KLNQVYF--PITGRKIREPHMFS 630
E +I+ TDGTLR+ +DIRK L+ YF PIT K + FS
Sbjct: 152 EHLIVTGSTDGTLRT--YDIRKGTLSSDYFSHPITSVKTSKSASFS 195
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 29.5 bits (63), Expect = 0.46
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 259 RKRNNQGLHALKTPKYKFLTKEELELEIA 345
RK+ N L+ +KTPKY LTK L A
Sbjct: 286 RKKENVNLNLVKTPKYDDLTKMNLSSSTA 314
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 28.7 bits (61), Expect = 0.80
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 FRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKADVLLQIPPV-LKIHKPIDEVLSRD 432
F++ N LH++ FL ++LE + +A E+ +VLL + + IDE D
Sbjct: 273 FQRLQNSSLHSI------FLDPKQLEQKAQEAEERKNVLLNFDRTSAQRTRIIDEAADFD 326
Query: 433 PALIGYDT 456
P + DT
Sbjct: 327 PTSLASDT 334
>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 633 IRKHVWFSYFASGYWKVHLI*FLSDIMITTAQSSISVSFN 514
I +W A G WK H I FL +++ + QS +S + +
Sbjct: 159 IISELWEKEGARGLWKGHTISFLHNLLYSGLQSWLSATLS 198
>SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 177
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 58 LLQKIATKHVKTLIIKYEPCVLVISNRKLNIVPSFYDGEQDPAPKFFT 201
+LQ++ + V TL + C + + LN++ DG PA +FFT
Sbjct: 59 ILQELRNQKV-TLCVASRTCAPKYAKQALNLMKVPIDGSLKPAIEFFT 105
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -2
Query: 161 NDGTMFNFRLDITRTHGSYFIINVLTCFVAIFCNSKDILAFKIQN 27
NDG ++ + + R + + ++ F+ CN++ +A KIQN
Sbjct: 84 NDGKCYSV-IAVHRLSFTLVMFHLFLAFILSLCNTRSRVAIKIQN 127
>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 373 LQIPPVLKIHKPIDEVLSRDPALIG 447
LQ+ P L + IDEV DP LIG
Sbjct: 12 LQLLPALGLPSRIDEVDVSDPELIG 36
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 621 VWFSYFASGYWKVHLI*FLSDIMI-TTAQSSISVSFNNNP 505
VWF +F+S W+ + + D++I TA I + +P
Sbjct: 1119 VWFMFFSSSRWQAIRVECIGDLIIFCTAFYGILSAIKGSP 1158
>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 85 VKTLIIKYEPCVLVISNRKLNIVPSFYDGEQD 180
+ L+ K +PC V+ + IV SFY D
Sbjct: 206 ISLLLSKKQPCDFVVREVLVQIVHSFYKAHLD 237
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = -2
Query: 299 GVLRACRP*LFLLRKTLVKSGRVNLFNRFCTFGVKNFGAGSCSPS*NDGTMFNFRL 132
G+ RP + L + + G ++++ + F V + G C + D F FRL
Sbjct: 385 GIASLARPKVCLFVRNGARLGPTSIYHAWKAFDVDSTIGGMCGKTSIDTGKFGFRL 440
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,150
Number of Sequences: 5004
Number of extensions: 61886
Number of successful extensions: 189
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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