Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i16
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49909-16|CAB60995.1|  418|Caenorhabditis elegans Hypothetical p...    92   4e-19
Z82262-4|CAE17770.1|  679|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z48717-3|CAA88606.1|  520|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF067209-1|AAC16982.2|  553|Caenorhabditis elegans Warthog (hedg...    29   3.0  
U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF016418-10|AAK18896.1|  611|Caenorhabditis elegans Hypothetical...    27   9.1  

>Z49909-16|CAB60995.1|  418|Caenorhabditis elegans Hypothetical
           protein C14A4.14 protein.
          Length = 418

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 1/158 (0%)
 Frame = +1

Query: 193 FFTPNVQNLLKRLTRPDFT-KVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKADV 369
           F    VQ LL  LT  D   KVFR R        +   +  +T+E LE    +  E+A  
Sbjct: 42  FVEKEVQKLLTDLTEIDLEHKVFRPRRTS---IQQRSHFALMTEERLEKTRERMREEARR 98

Query: 370 LLQIPPVLKIHKPIDEVLSRDPALIGYDTSKYLFTDITFGIANEERIIIERDTDGTLRSC 549
            LQ  PV +  +   ++L++D  L  +DTSK++FTDITF   +++R ++ R+ DGTLR+ 
Sbjct: 99  FLQFVPVKEPREESVQILAKDLELKDFDTSKFVFTDITFDATDQDRTVVVREPDGTLRTA 158

Query: 550 DHDIRKKLNQVYFPITGRKIREPHMFSDEEKFHNLLDR 663
           + +   ++N+ Y+    R +  P +FSD     N LD+
Sbjct: 159 NPEEHDRMNRTYYQKPNRSVNPPPLFSD-PNLQNALDK 195


>Z82262-4|CAE17770.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.9 protein.
          Length = 679

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +3

Query: 144 EHCTIILRWRTRPGSKVFYTKCTESIKEIDSARFY*SFPQEKQ 272
           E  T ILR + R  ++V YTK    ++EI++A  Y    QEKQ
Sbjct: 54  EKTTPILRIKVRAVNRVIYTKKDNLLQEIENASEY-KKEQEKQ 95


>Z48717-3|CAA88606.1|  520|Caenorhabditis elegans Hypothetical
           protein T10B9.5 protein.
          Length = 520

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 233 LGQILLKFSARETIKVYMPLKLPNISFSRKKSLNWKL 343
           L QIL K+S   T + ++PLKL  I+ +   +++ KL
Sbjct: 478 LAQILKKYSLETTFETHIPLKLVGIATTAPTNVHLKL 514


>AF067209-1|AAC16982.2|  553|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 9 protein.
          Length = 553

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 151 VPSFYDGEQDPAPKFFTP--NVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPK 303
           +P+F  G   PAP+FF P   +Q+  K L R +     R+++NQ    +  P+
Sbjct: 467 LPTF--GAAPPAPQFFAPQQQIQDQQKNLQRVNIQAPQREQSNQPAQLMLQPQ 517


>U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical
           protein R02F2.7 protein.
          Length = 693

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 145 NIVPSFYDGEQDPAP-KFFTPNVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKF 312
           NI+  F    Q+ AP KF      ++ ++L  P+F         QG+H  +T K  F
Sbjct: 416 NILKVFKKVAQEAAPVKFVNRTAADVAEKLREPEFAVAEALSLLQGVHTAETKKEVF 472


>AF016418-10|AAK18896.1|  611|Caenorhabditis elegans Hypothetical
           protein C49G7.1 protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
 Frame = +1

Query: 79  KHVKTLIIKYEPCVLVISNR-KLNIVPSFYDGEQDPAPKFFTPNVQNLLKRLTRPDFTKV 255
           K  KT  + Y   +    NR + ++     DG+          N  NLLK L    F  V
Sbjct: 241 KTFKTYYLYYYGSIKAFENRWRYSMFLDAIDGKNAILDAVRERNKPNLLKALQNGAFVDV 300

Query: 256 FRKRNNQGLH 285
           + K  N  LH
Sbjct: 301 YNKFGNTALH 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,696,649
Number of Sequences: 27780
Number of extensions: 345546
Number of successful extensions: 886
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)