Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i14
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    37   0.003
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    34   0.019
SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase family|Sc...    30   0.41 
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    28   1.7  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    27   2.9  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    27   3.8  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.1  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   5.1  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   5.1  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    26   5.1  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    26   6.7  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    26   6.7  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   8.9  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.9  
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    25   8.9  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   8.9  

>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = -2

Query: 565 TTTAVSYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMWNPSSRWSTVFMSSLSTVVVASE 386
           T T  SYWS+ ST++   V+   T S   FP   +   NP  R  +   +S++    AS+
Sbjct: 96  TVTVSSYWSLVSTSVTGTVYVPYTSSVACFPYATSDAPNPIPRGDSATSTSIAPTYSASD 155

Query: 385 ARRSVGYSSKSFT 347
           +  +   SS   T
Sbjct: 156 SSATTITSSSPST 168


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 30/137 (21%), Positives = 60/137 (43%), Gaps = 3/137 (2%)
 Frame = +3

Query: 165  GIRYDMKRHVAGVISDHQSLILFAIITAQTVNDYVTDLQGLLINIQK*TMDINIASVLEV 344
            G+   ++   + +ISD +S     +  A T  DY   L+ LL N       + +AS  ++
Sbjct: 1340 GVENKLRSRYSDLISDVESRGTTVVSIATTTGDYAEKLK-LLRNQDINDFSLGLASYSDI 1398

Query: 345  FVKDLLEYPTDRLASDATTTVLSEDMNTVDHLDEGFHIGVIFTGKVRKDTVRVG---WTA 515
            F K L+  P  + ++   +     D N  +  D    + VI  G++    +R+G    T 
Sbjct: 1399 FDKPLVTLPVKKSSAVDESENDFYDRNDEESFDIVSLVSVIKCGQLLSSKLRLGPLLTTV 1458

Query: 516  VQSVVDAMDQ*DTAVVV 566
            ++ V++       A+++
Sbjct: 1459 IKLVIEYSQAKHAAIIL 1475


>SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = +3

Query: 150 FMVPKGIRYDMKRHVAGVISDHQSLILFAIITAQTVN----DYVTDLQGLLINIQK*TMD 317
           + +P+G+        AG  SD+ S+ L     A  +     ++V D+  + +N+Q   + 
Sbjct: 168 YSIPEGVERREDDEDAGAHSDYGSITLLFQRDAAGLEIRPPNFVKDMDWIKVNVQPDVVL 227

Query: 318 INIASVLEVFVKDLLEYPTDRLASD 392
           +NIA +L+ +    L     R+  D
Sbjct: 228 VNIADMLQFWTSGKLRSTVHRVRID 252


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -2

Query: 433 STVFMSSLSTVVVASEARRSVGY---SSKSFTKTS 338
           STV   SLSTVV+ +E  +S  Y   S++SF   S
Sbjct: 401 STVISKSLSTVVIGNETGKSESYPATSTRSFNDIS 435


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 29/89 (32%), Positives = 42/89 (47%)
 Frame = -2

Query: 631 ASFSTSTFLSQPLRVSWALTGATTTAVSYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMW 452
           AS +TST  S  L  S  LT ++ +AVS     STT   ++  + T+S        T + 
Sbjct: 118 ASSTTSTTSSSSLVSSTTLTSSSPSAVS-----STTSIPSI--SSTISSSVSTSSFTSL- 169

Query: 451 NPSSRWSTVFMSSLSTVVVASEARRSVGY 365
             SS +STV  S+ +T  + S      GY
Sbjct: 170 -SSSGFSTVLSSTNTTSALPSSGWNVTGY 197


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +2

Query: 545 IRHSRCRGSRKSPGNSQRLTQEGRCRKRCICQWKNSRPCCTDD 673
           I  SRC   +KS     R    GRCR   +    NS  C +DD
Sbjct: 337 ISRSRCSRCKKSKKGCDRQRPCGRCRDAGL----NSEDCISDD 375


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 82   EFNYSAHVVCRFENMKRTGLVVSRS 8
            E N +AH++C+FE   R  L  S+S
Sbjct: 1560 ESNTTAHLLCQFEEACRQALTSSKS 1584


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -2

Query: 571 GATTTAVSYWSIASTTLWTAVHPTR---TVSFRTFPVKMTPMWNPS-SRWSTVFMSSLST 404
           GA T  +   +  +  L T +H      TV  RT  + M  +      RWSTVF ++ S+
Sbjct: 678 GADTVIMERLASDNPYLQTTIHHLEDYATVGLRTLCIAMREVPEDEYQRWSTVFETAASS 737

Query: 403 VV 398
           +V
Sbjct: 738 LV 739


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 158 PERHSIRHEASRCWSYFRPPKPDSVCHHHSPDRER 262
           P   S  +  S+ +S++RPPKP S       D+ R
Sbjct: 690 PVTPSSPYSTSQGYSFYRPPKPKSSVRKRDMDQLR 724


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -2

Query: 454 WNPSSRWSTVFMSSLSTVVV--ASEARRSVGYS-SKSFTKTSRTLAILMSM 311
           W+ + RWS VFM  L  + V   S    S+ YS    F  +++   + +SM
Sbjct: 75  WHWAKRWSIVFMFCLMQIYVIWTSNGFGSIEYSVMAQFNVSAQVATLCLSM 125


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 140 RRGFYGPERHSIRHEASRCWSYFRPPKPDSVCHHHS 247
           + G Y   RH   +  S  W YFR  + +S+ +H S
Sbjct: 93  KHGKYDFSRHCTDYGHSYEWPYFRSLRRESMLYHTS 128


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 175 YRMPFGTIKATSVKLPKR 122
           YR+PF T++A SV+L  R
Sbjct: 154 YRIPFDTVEAESVRLADR 171


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 150 KPRLSNSQNGPRTRFLSNGEIPKNSTTP 67
           K  L    + P+ R LSN + P  +TTP
Sbjct: 578 KHNLFRKNSFPKRRRLSNSDTPSETTTP 605


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 26/112 (23%), Positives = 58/112 (51%)
 Frame = -2

Query: 673 IISAARS*IFPLTDASFSTSTFLSQPLRVSWALTGATTTAVSYWSIASTTLWTAVHPTRT 494
           +I ++ S +   + A+  +S+  S PL  S   + A+++ ++   ++S++  ++      
Sbjct: 40  VIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSL-VSSSSQQSSSSSASL 98

Query: 493 VSFRTFPVKMTPMWNPSSRWSTVFMSSLSTVVVASEARRSVGYSSKSFTKTS 338
            S  +  +  +   +P+S  S+  +SS S+ +VAS +  S G SS S + +S
Sbjct: 99  TSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASSS--SSGMSSSSLSHSS 148


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 161 RDHKSHVCQTPKTDHALDFSQTEKFQR 81
           R +++ +CQT   DH L   ++EKF++
Sbjct: 352 RKNQAGLCQTVILDHGLYVFESEKFRK 378


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 144 RLSNSQNGPRTRFLSNGEIPKNSTTPR 64
           R  +S N  RT F  NG  P +S +PR
Sbjct: 78  RSRSSNNKRRTSFGKNGASPTHSASPR 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,642
Number of Sequences: 5004
Number of extensions: 66496
Number of successful extensions: 209
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)