Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i14
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465...    31   0.75 
07_03_1048 - 23545060-23546381,23546479-23546554                       29   4.0  
04_03_0389 - 15302079-15302120,15302545-15302634,15302718-153029...    29   4.0  
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701...    29   4.0  
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650...    29   4.0  
05_06_0271 + 26836396-26836610,26836793-26836872,26837573-268376...    28   7.0  
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406...    28   9.3  
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260...    28   9.3  

>03_02_0913 + 12344096-12344125,12344284-12345970,12346243-12346573,
            12346712-12347567,12347760-12347883,12348469-12348688,
            12348771-12349229,12349318-12349519
          Length = 1302

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
 Frame = -2

Query: 688  SILY-LIISAARS*IFPLTDASFSTSTFLSQPLRVSWALTGATTTAVSYWSIASTTLWTA 512
            S+ Y LI ++  + +  + D   S +T L  P      L         +W     TLW +
Sbjct: 1101 SVFYSLIYTSIPTVVVGILDKDLSHNTLLHYPRLYETGLQNEGYNLTLFWITMLDTLWQS 1160

Query: 511  VHPTRTVSFRTFPVKMTPMWNPSSRWSTVFMSSLSTVVVASEARRSV 371
            +     V F T+ +    +W+  S W T+ +  L  + +A + +R V
Sbjct: 1161 L-VLFYVPFFTYNISTMDIWSMGSLW-TIAVVILVNIHLAMDIQRWV 1205


>07_03_1048 - 23545060-23546381,23546479-23546554
          Length = 465

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -2

Query: 610 FLSQPLRVSWALTGATTTAV 551
           FL+ P+RV+W LT AT TA+
Sbjct: 153 FLNLPVRVAWRLTVATGTAI 172


>04_03_0389 -
           15302079-15302120,15302545-15302634,15302718-15302983,
           15303196-15303883
          Length = 361

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -3

Query: 432 PRCSCLRSALWSSRLKQGGPWDIPANLSQRLREHSQY*CPW 310
           P    LR A+    LK      +P N  +RLR H    CPW
Sbjct: 99  PSVEVLRKAITEYSLKARVDIKMPRNEQKRLRAHCVEGCPW 139


>01_06_0734 +
           31569017-31569358,31569832-31569906,31570009-31570159,
           31570716-31570784,31570864-31571036,31571474-31571611,
           31571747-31571872,31571951-31572049,31573175-31573298,
           31573465-31573528,31573798-31573852,31573951-31574075,
           31574228-31574301,31574436-31574485,31574722-31574808,
           31574897-31574947,31575025-31575108,31575400-31575498
          Length = 661

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 429 VDHLDEGFHIGVIFTGKVRKDTVRVG 506
           V  ++  F++G I TG+VR   VRVG
Sbjct: 271 VSMMERDFYLGRILTGRVRSGVVRVG 296


>01_01_0832 -
           6500139-6500333,6500610-6500875,6501494-6501815,
           6501915-6502156,6502229-6502457,6503020-6503184,
           6503279-6503605,6504150-6504191,6504333-6504400,
           6504748-6504934,6506249-6506311,6506748-6506790,
           6506919-6507019,6507110-6507184,6507359-6507445,
           6507593-6507682,6507906-6507992,6508585-6508783,
           6509113-6509177,6509502-6509606,6509726-6509871,
           6510100-6510224,6510335-6510437,6510482-6510596,
           6510734-6510869,6511298-6511387,6511484-6511578,
           6511698-6511763,6511868-6511936,6512034-6512147,
           6512241-6512448,6512545-6512600,6512818-6513552
          Length = 1671

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = -1

Query: 581 GSYGSHDNGCVLLVHSVYHALDCCPSHSNSVFPDLSREDDPYVEPLVQVVHGVHVFAQHC 402
           GS  ++D  C      V  +  CC S  N V P ++++     E L+          +HC
Sbjct: 319 GSGSNNDQECQSEAQVVGKSTGCCDSCGNRVPPKIAKKKKQAGEQLL---------CRHC 369

Query: 401 GRRV*SKAVRGIFQQIFH 348
            + + SK   GI ++I+H
Sbjct: 370 DKLLQSKQYCGICKKIWH 387


>05_06_0271 +
           26836396-26836610,26836793-26836872,26837573-26837641,
           26837694-26837985,26838303-26838399,26838478-26838744,
           26838832-26838909,26839019-26839120,26839251-26839300,
           26839383-26839482,26839645-26839743,26839840-26839968,
           26840319-26840427,26840652-26841055,26841140-26841280,
           26841373-26841393
          Length = 750

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 484 RTFPVKMTPMWNPSSRWSTVFMSSLSTVVVASEARRSVGYSSKS 353
           R+ P+    +W     W TV + SL  +V +  +R +  +SS+S
Sbjct: 568 RSLPITFDGLWTQVITWLTVLIVSLFAMVRSVPSRMAKRFSSQS 611


>07_01_0004 +
           35300-35533,35617-35732,39044-39287,39451-40578,
           40657-40833
          Length = 632

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 462 PLCGTPRPGGPRCSCLRSALWSSRLKQGGPW 370
           P CG  + G PR SC + A    +LK+ G W
Sbjct: 291 PRCGAFKDGVPRMSCAKIA-GRDKLKRRGDW 320


>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
            2602637-2602810,2603032-2603098,2603735-2603757,
            2603899-2604001,2604087-2604848,2605098-2605292,
            2605496-2606115,2606429-2606480,2606558-2607197,
            2608366-2608574,2608660-2609189,2609500-2609566,
            2609651-2609728,2610415-2610483,2610569-2610643
          Length = 2021

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
 Frame = -1

Query: 704  LRQILQYFVPYHQCSKVVN----FSIDRCIFFYIYLPESAFASFLGSYGSHDNGCVLLVH 537
            L Q    F P H  SK+        I R + FY     + ++  L    + DN  V  +H
Sbjct: 968  LPQWTHVFRPLHNISKIATSKAVLQIVRAVLFY-----AVYSDPLSVSRAPDNVLVTGLH 1022

Query: 536  SVYHALDCCPSHS----NSVFPDLSREDD 462
             ++ ALD C S S    N    D+ + DD
Sbjct: 1023 LLWLALDICESESKRYANQYGMDIVQHDD 1051


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,765,498
Number of Sequences: 37544
Number of extensions: 456882
Number of successful extensions: 1457
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)