Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3i14
(758 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 32 0.38
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 32 0.38
Z36719-4|CAA85315.2| 513|Caenorhabditis elegans Hypothetical pr... 31 0.67
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z22177-5|CAA80150.1| 576|Caenorhabditis elegans Hypothetical pr... 30 2.1
AL132948-39|CAI79178.1| 380|Caenorhabditis elegans Hypothetical... 30 2.1
AL132948-38|CAD31811.1| 378|Caenorhabditis elegans Hypothetical... 30 2.1
AF130406-1|AAD42307.1| 636|Caenorhabditis elegans phophoinositi... 30 2.1
AF095787-1|AAC64972.1| 563|Caenorhabditis elegans EAT-4 protein. 30 2.1
AF026207-3|AAK82905.1| 636|Caenorhabditis elegans Pdk-class pro... 30 2.1
AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical ... 29 2.7
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 29 2.7
AC024755-2|AAL65800.1| 498|Caenorhabditis elegans Hypothetical ... 29 2.7
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z82071-5|CAB04919.2| 514|Caenorhabditis elegans Hypothetical pr... 29 4.7
AY204180-1|AAO39184.1| 514|Caenorhabditis elegans nuclear recep... 29 4.7
AL110478-13|CAC14397.1| 514|Caenorhabditis elegans Hypothetical... 29 4.7
Z92824-7|CAB07310.1| 156|Caenorhabditis elegans B0413.7 protein. 28 6.3
Z81516-1|CAB04203.1| 521|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z48055-1|CAA88134.1| 544|Caenorhabditis elegans Hypothetical pr... 28 6.3
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 28 6.3
U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical pr... 28 6.3
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 28 6.3
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z68320-2|CAA92706.1| 502|Caenorhabditis elegans Hypothetical pr... 28 8.3
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 28 8.3
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 32.3 bits (70), Expect = 0.38
Identities = 28/98 (28%), Positives = 43/98 (43%)
Frame = -2
Query: 619 TSTFLSQPLRVSWALTGATTTAVSYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMWNPSS 440
TST +P + +T++ + +TTL T+ T T T V +P +P +
Sbjct: 400 TSTTTEEPSTSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTSPSTSPVT 459
Query: 439 RWSTVFMSSLSTVVVASEARRSVGYSSKSFTKTSRTLA 326
STV SS S+ V + +S S T T+ T A
Sbjct: 460 --STVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTA 495
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 32.3 bits (70), Expect = 0.38
Identities = 28/98 (28%), Positives = 43/98 (43%)
Frame = -2
Query: 619 TSTFLSQPLRVSWALTGATTTAVSYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMWNPSS 440
TST +P + +T++ + +TTL T+ T T T V +P +P +
Sbjct: 400 TSTTTEEPSTSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTSPSTSPVT 459
Query: 439 RWSTVFMSSLSTVVVASEARRSVGYSSKSFTKTSRTLA 326
STV SS S+ V + +S S T T+ T A
Sbjct: 460 --STVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTA 495
>Z36719-4|CAA85315.2| 513|Caenorhabditis elegans Hypothetical
protein C06C3.8 protein.
Length = 513
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -1
Query: 593 ASFLGSYGSHDNGCVLLVHSVYHALDCCPSHSNSVFPDLSREDDPYVEPLVQV 435
+S L S H L+H +LDC P+ S+ D S+E D V ++
Sbjct: 420 SSRLPSNDEHPGAKPTLIHHTTPSLDCQPTKHESIHSDFSKEMDQLVNQATRI 472
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = -2
Query: 643 PLTDASFSTSTFLSQPLRVSWALTGATTTAVSYWSIASTTLWTAVHPTRTVSFRTFPVKM 464
P+T + T+T + + T TTT + S STT T PT T S T
Sbjct: 58 PVTTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTT--TTTTPTTTTSTTTTTTTT 115
Query: 463 TPMWNPSSRWSTV 425
T P++ +T+
Sbjct: 116 TTTATPTTTTTTM 128
>Z22177-5|CAA80150.1| 576|Caenorhabditis elegans Hypothetical
protein ZK512.6 protein.
Length = 576
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 283 PWRSVT*SFTVWAVMMANRIRLW 215
PW+++ S VWA+++AN R W
Sbjct: 297 PWKAIVTSKPVWAIIVANFARSW 319
>AL132948-39|CAI79178.1| 380|Caenorhabditis elegans Hypothetical
protein Y39B6A.12b protein.
Length = 380
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = -2
Query: 514 AVHPTRTVSFRTFPVKMTPMWNPSSRWSTVFMSSLSTVVVASEARRSVGYSSKSFTKTSR 335
A +P V P++ P W PSS+ ++ ++ VA R + Y + F
Sbjct: 30 AENPENPVDLSEIPLETKPAWFPSSKGRSIVWEHITW--VAESQRAACNYCAAEFQVKGG 87
Query: 334 TLAIL 320
T A+L
Sbjct: 88 TSALL 92
>AL132948-38|CAD31811.1| 378|Caenorhabditis elegans Hypothetical
protein Y39B6A.12a protein.
Length = 378
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = -2
Query: 514 AVHPTRTVSFRTFPVKMTPMWNPSSRWSTVFMSSLSTVVVASEARRSVGYSSKSFTKTSR 335
A +P V P++ P W PSS+ ++ ++ VA R + Y + F
Sbjct: 30 AENPENPVDLSEIPLETKPAWFPSSKGRSIVWEHITW--VAESQRAACNYCAAEFQVKGG 87
Query: 334 TLAIL 320
T A+L
Sbjct: 88 TSALL 92
>AF130406-1|AAD42307.1| 636|Caenorhabditis elegans
phophoinositide-dependent proteinkinase 1a protein.
Length = 636
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -3
Query: 144 RLSNSQNGPRTRFLSNGEIPKNSTTPRMSYV 52
R S+S + P TRF S+ E+P+ +T R ++V
Sbjct: 241 RSSDSGSPPPTRFYSDEEVPEENTARRTTFV 271
>AF095787-1|AAC64972.1| 563|Caenorhabditis elegans EAT-4 protein.
Length = 563
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 283 PWRSVT*SFTVWAVMMANRIRLW 215
PW+++ S VWA+++AN R W
Sbjct: 284 PWKAIVTSKPVWAIIVANFARSW 306
>AF026207-3|AAK82905.1| 636|Caenorhabditis elegans Pdk-class
protein kinase protein1, isoform b protein.
Length = 636
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -3
Query: 144 RLSNSQNGPRTRFLSNGEIPKNSTTPRMSYV 52
R S+S + P TRF S+ E+P+ +T R ++V
Sbjct: 241 RSSDSGSPPPTRFYSDEEVPEENTARRTTFV 271
>AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical
protein K07D4.6 protein.
Length = 389
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -2
Query: 622 STSTFLSQPLRVSWALTGATTTAVSYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMW 452
+TST ++P + T TTT + S STT T PT T + + +W
Sbjct: 270 TTSTTTTEPTTTTSTTTQTTTTVPTSTSTISTTSTTTTTPTTTTTTTSTTTSDDLLW 326
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 542 PIRHSRCRGSRKSPGNSQRLTQEGRCRKRCICQ 640
PI H+ RG GNS R + CR RC+ Q
Sbjct: 25 PINHTVSRGCG---GNSNRFMRRAHCRNRCVKQ 54
>AC024755-2|AAL65800.1| 498|Caenorhabditis elegans Hypothetical
protein Y34B4A.10 protein.
Length = 498
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = -2
Query: 574 TGATTTAVSYWSIASTTLWTAVHPTR--TVSFRTFPVKMTPMWNPSSRWSTVFMSSLST- 404
T + TT + +I++T L T PT + +T P + P S+ ++ +
Sbjct: 282 TESATTPTTTTTISTTPLVTTTPPTAQSAIVIKTLPTTVAP-----SKVGESYLGGWNED 336
Query: 403 -VVVASEARRSVGYSSKSFTKTSRTLAI 323
VV + ++ S+GY+ FT+ ++AI
Sbjct: 337 EAVVVTTSKPSLGYAISQFTQLPESIAI 364
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 29.1 bits (62), Expect = 3.6
Identities = 29/110 (26%), Positives = 42/110 (38%)
Frame = -2
Query: 643 PLTDASFSTSTFLSQPLRVSWALTGATTTAVSYWSIASTTLWTAVHPTRTVSFRTFPVKM 464
P T + ST+TF + + + T TTTA +TT T PT T + K
Sbjct: 319 PTTTTTASTTTFKTTTITTTTQTTTPTTTA-------TTTKPTTTTPTTTRTPVDCSAKC 371
Query: 463 TPMWNPSSRWSTVFMSSLSTVVVASEARRSVGYSSKSFTKTSRTLAILMS 314
P W S + +T A +SVG T + AI ++
Sbjct: 372 DPFWVSYSDGCYAKIQGTATFETAKLGCQSVGGEMAVITDAAMNEAIRLA 421
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/73 (34%), Positives = 31/73 (42%)
Frame = -2
Query: 565 TTTAVSYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMWNPSSRWSTVFMSSLSTVVVASE 386
+TT S ++STTL T TR S TP PS+ +T M STV +
Sbjct: 287 STTTSSSTMLSSTTLLTTETETRESSSTGSTQTTTPSTEPSTTITTP-MEQSSTVSSVQK 345
Query: 385 ARRSVGYSSKSFT 347
R S S S T
Sbjct: 346 TRTSEDKPSSSTT 358
>Z82071-5|CAB04919.2| 514|Caenorhabditis elegans Hypothetical
protein W05B5.3a protein.
Length = 514
Score = 28.7 bits (61), Expect = 4.7
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Frame = -2
Query: 622 STSTFLSQPLRVSWALTGATTTAV--SYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMWN 449
STS L L +S LT T + S+ S +T+ + + P+ + +FR PV + N
Sbjct: 4 STSGSLPCHLPLS-LLTNLQTPPIDTSFSSPPATSSSSLLSPSPSSAFR--PVVPKSLMN 60
Query: 448 PSSRWSTVFMSSLSTVVVASEARRSVGYSSKSFTKTSRTLA 326
P T +MS++ ++VV++ YS + S++LA
Sbjct: 61 PQPAMDTFYMSAIQSLVVST--TNDDQYSEHGALEGSKSLA 99
>AY204180-1|AAO39184.1| 514|Caenorhabditis elegans nuclear receptor
NHR-85 protein.
Length = 514
Score = 28.7 bits (61), Expect = 4.7
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Frame = -2
Query: 622 STSTFLSQPLRVSWALTGATTTAV--SYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMWN 449
STS L L +S LT T + S+ S +T+ + + P+ + +FR PV + N
Sbjct: 4 STSGSLPCHLPLS-LLTNLQTPPIDTSFSSPPATSSSSLLSPSPSSAFR--PVVPKSLMN 60
Query: 448 PSSRWSTVFMSSLSTVVVASEARRSVGYSSKSFTKTSRTLA 326
P T +MS++ ++VV++ YS + S++LA
Sbjct: 61 PQPAMDTFYMSAIQSLVVST--TNDDQYSEHGALEGSKSLA 99
>AL110478-13|CAC14397.1| 514|Caenorhabditis elegans Hypothetical
protein W05B5.3a protein.
Length = 514
Score = 28.7 bits (61), Expect = 4.7
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Frame = -2
Query: 622 STSTFLSQPLRVSWALTGATTTAV--SYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMWN 449
STS L L +S LT T + S+ S +T+ + + P+ + +FR PV + N
Sbjct: 4 STSGSLPCHLPLS-LLTNLQTPPIDTSFSSPPATSSSSLLSPSPSSAFR--PVVPKSLMN 60
Query: 448 PSSRWSTVFMSSLSTVVVASEARRSVGYSSKSFTKTSRTLA 326
P T +MS++ ++VV++ YS + S++LA
Sbjct: 61 PQPAMDTFYMSAIQSLVVST--TNDDQYSEHGALEGSKSLA 99
>Z92824-7|CAB07310.1| 156|Caenorhabditis elegans B0413.7 protein.
Length = 156
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = -2
Query: 514 AVHPTRTVSFRTFPVKMTPMWNPSSRWSTVFMSSLSTVVVASEARRSVGYSSKSFTKTSR 335
A +P V P++ P W PSS+ ++ + VA R + Y + F
Sbjct: 30 AENPENPVDLSEXPLETKPAWFPSSKGRSIVWEHXTW--VAESQRAACNYCAAEFQVKGG 87
Query: 334 TLAIL 320
T A+L
Sbjct: 88 TSALL 92
>Z81516-1|CAB04203.1| 521|Caenorhabditis elegans Hypothetical
protein F26H9.2 protein.
Length = 521
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 391 SEARRSVGYSSKSFTKTSRTLAILMSMVYFWMLMRRPWR 275
S+A S SKS T S +I + FW+ + RPW+
Sbjct: 21 SDATSSTSGGSKSKTGRSPRKSISFASSKFWLRLVRPWK 59
>Z48055-1|CAA88134.1| 544|Caenorhabditis elegans Hypothetical
protein T07A5.3 protein.
Length = 544
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = -2
Query: 415 SLSTVVVASEARRSVGYSSKSFTKTSRTLAILMSMVYFWMLMRRPWRSVT*SFTVWAVMM 236
SL + V+S + + GY S K T I V L PWR + S VWA+++
Sbjct: 234 SLIWMYVSSHSPETHGYISDD-EKKQVTEKIGDVAVKNMSLTTLPWRDMMTSSAVWAIII 292
Query: 235 ANRIRLW 215
R W
Sbjct: 293 CTFCRSW 299
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = -2
Query: 559 TAVSYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMWNPSSRWSTVFMSSLSTVVVASEAR 380
+A ++ S A+++ W+ + +RT ++ K+ + PSS +T +SSLST EA
Sbjct: 6 SASAHTSSAASSTWSTIPHSRTPPLQSNIEKVGDIVRPSS--ATALLSSLSTSSSGIEAS 63
Query: 379 RS 374
S
Sbjct: 64 TS 65
>U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical
protein T09D3.3 protein.
Length = 592
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -2
Query: 637 TDASFSTSTFLSQPLRVSWALTGATTTAVSYWSIASTTLWTAVHPTRTVSFRTFPVKMTP 458
T +S +T+T + P+ V+ T TTT +Y + ST+ T + P T S V +TP
Sbjct: 461 TTSSSTTTTTTTTPVPVTSTTTEPTTT--TYTTSTSTSTTTTLPP--TTSTPKIVVNLTP 516
Query: 457 MW 452
++
Sbjct: 517 IY 518
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = -2
Query: 622 STSTFLSQPLRVSWALTGATTTAVSYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMWNPS 443
ST T + P + ++ +TTTA +I STT+ P + S T + T P+
Sbjct: 216 STITSTTVPESSTTSVVQSTTTAEPTSTITSTTV-----PESSTSLLTSTLASTTTLIPT 270
Query: 442 SRWSTVFMSSLSTVVVAS 389
S ST+ ++S T + S
Sbjct: 271 STMSTITLTSDRTSTITS 288
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical
protein T06E4.3b protein.
Length = 2514
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = +3
Query: 87 EFLRLREIECVVRFGSLTD--VAFMVPKGIRYDMKRHVAGVISDHQSLILFAIITAQTVN 260
E +LR + C ++ T + + + K + + + LILF Q +N
Sbjct: 517 ESTKLRAVNCALQLEKKTGKYINLVAEMSLAVFSKSQTDRIANSFEPLILFLTDNLQLIN 576
Query: 261 DYVTDLQGLLINIQK*TMDINIASVLEVFVK 353
D++T L L Q+ ++ I + K
Sbjct: 577 DFITILIAKLCEKQEFYSELTILKYFKTLQK 607
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical
protein T06E4.3a protein.
Length = 2531
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = +3
Query: 87 EFLRLREIECVVRFGSLTD--VAFMVPKGIRYDMKRHVAGVISDHQSLILFAIITAQTVN 260
E +LR + C ++ T + + + K + + + LILF Q +N
Sbjct: 517 ESTKLRAVNCALQLEKKTGKYINLVAEMSLAVFSKSQTDRIANSFEPLILFLTDNLQLIN 576
Query: 261 DYVTDLQGLLINIQK*TMDINIASVLEVFVK 353
D++T L L Q+ ++ I + K
Sbjct: 577 DFITILIAKLCEKQEFYSELTILKYFKTLQK 607
>Z68320-2|CAA92706.1| 502|Caenorhabditis elegans Hypothetical
protein W07A12.7 protein.
Length = 502
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = -2
Query: 559 TAVSYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMWNP---SSRWSTVFMSSLSTV-VVA 392
T S + + STT T + V+ T + WNP ++ ++TV+ + +V +A
Sbjct: 347 TVSSKYIMVSTTSKTLFRSSLIVAIATIYAILPEYWNPNAGNTLYNTVYTAVFRSVFAMA 406
Query: 391 SEARRSVGYSSKSFTKTSRTLAILMSMVYFWMLMRRP 281
+ Y + + T+ A+L + Y L+ P
Sbjct: 407 ISGMIAALYFRQEYRPTNPIFAMLAKLTYNAYLLHMP 443
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = +3
Query: 87 EFLRLREIECVVRFGSLTD--VAFMVPKGIRYDMKRHVAGVISDHQSLILFAIITAQTVN 260
E +LR + C ++ T + + + K + + + LILF Q +N
Sbjct: 517 ESTKLRAVNCALQLEKKTGKYINLVAEMSLAVFSKSQTDRIANSFEPLILFLTDNLQLIN 576
Query: 261 DYVTDLQGLLINIQK*TMDINIASVLEVFVK 353
D++T L L Q+ ++ I + K
Sbjct: 577 DFITILIAKLCEKQEFYSELTILKYFKTLQK 607
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,496,014
Number of Sequences: 27780
Number of extensions: 391350
Number of successful extensions: 1388
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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