Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i14
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.33 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.44 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       24   1.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.3  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   3.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +3

Query: 75  LNSLEFLRLREIECVVRFGSLT-DVAFMVPKGIRYDMKRHVAGVISDHQSLILFAIITAQ 251
           +N+ EF  L   +C+V  G L  ++ +  P          +A  ++D  S+++ ++ITA+
Sbjct: 595 MNAGEFANL---QCIVPTGDLPLNIRWSYPGEEMGGSSGVLAKKVADRVSMLMISVITAR 651

Query: 252 TVNDYV 269
              +YV
Sbjct: 652 HAGEYV 657


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 314 HGLFLDVDEEALEVCDIVVHGLGCDDGKQNQAL 216
           H  F+ +      + DIVV  +  DDG + Q L
Sbjct: 203 HAAFISMRHRGAHITDIVVLVVAADDGVKEQTL 235


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 613 TFLSQPLRVSWALT 572
           TFL  PL + WA+T
Sbjct: 88  TFLMMPLEIGWAIT 101


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = -2

Query: 562 TTAVSYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMWNPSSRWSTVFMSSLST-VVVASE 386
           T A + + I STTLW   H    +   T P K  P  + S       + +L T  + A++
Sbjct: 431 TKASATFGIPSTTLWQRAH---RLGIDT-PKKDGPTKSWSDESLNNALDALRTGTISANK 486

Query: 385 ARRSVGYSSKSFTKTSRTLAILMS 314
           A ++ G  S +  K +R   I ++
Sbjct: 487 ASKAFGIPSSTLYKIARREGIRLA 510


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 551 HSRCRGSRKSPGNSQRLTQEGRCRK 625
           HSR   SR   GNS R   E  C +
Sbjct: 231 HSRYEDSRHEDGNSYRNDGERSCSR 255


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 84  LEFLRLREIECVVRFGSLTDVAFMV 158
           +E+    E  CV++FGS T   F V
Sbjct: 153 VEYFPFDEQTCVMKFGSWTYDGFQV 177


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 84  LEFLRLREIECVVRFGSLTDVAFMV 158
           +E+    E  CV++FGS T   F V
Sbjct: 157 VEYFPFDEQTCVLKFGSWTYDGFKV 181


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 527 HALDCCPSHSNS 492
           H+ + CP+HS S
Sbjct: 277 HSCEACPAHSKS 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,589
Number of Sequences: 438
Number of extensions: 4387
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)