Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3i11
(240 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 1.0
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 25 1.3
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 1.8
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 24 3.1
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb... 23 4.1
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 23 5.4
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 23 5.4
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 23 7.1
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 23 7.1
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 23 7.1
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 23 7.1
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 22 9.4
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.4 bits (53), Expect = 1.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -2
Query: 203 KIREALTSLDTPVTFKWVPSHRG---IKGNEIVDGIVNSN 93
+I E TSL T VT W PS +K N++ + + N
Sbjct: 214 QIEETFTSLSTFVTNNWSPSEYEDVMVKSNKVYETTLKRN 253
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 1.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 230 HYRNNYLLYKIREALTSLDTPVTFKWVPSH 141
H+R+ + L +IR L+ D+ ++F P H
Sbjct: 44 HHRHMFPLARIRSELSEQDSSISFTHDPLH 73
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 125 NEIVDGIVNSNYDEDHTNSCRVPFTDFL 42
NE + SN +H +S R P DF+
Sbjct: 480 NESFNAASQSNLSSEHGHSSRTPMDDFV 507
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 227 YRNNYLLYKIREALTSLDTPVTFKW 153
YR++ LL K+ + T + TP F W
Sbjct: 334 YRSSPLLAKLPDGSTEVCTPKNFIW 358
>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 339
Score = 23.4 bits (48), Expect = 4.1
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 224 RNNYLLYKIREALTSLDTPVTFKWVPSHRG-IKGNEIVDGIVNS 96
RN+YL ++ S + P T+ SH G I N+ G++ +
Sbjct: 222 RNSYLWGILQPPEPSAEGPFTWNGASSHEGDINNNDTELGLIEN 265
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 98 SNYDEDHTNSCRVPFTDFLFDH 33
S ++E+ TNS F D DH
Sbjct: 319 SIFNEEQTNSLTETFNDLTLDH 340
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 230 HYRNNYLLYKIREALTSLDTPVTF 159
H+R N L + E L +D +TF
Sbjct: 635 HFRQNALFWAHHEKLVVVDDAITF 658
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 22.6 bits (46), Expect = 7.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 112 STISFPLIPL*EGTHLNVTGVSKD 183
S ISF LI + EG H V G++ D
Sbjct: 170 SEISFKLIKVIEGHHTFVGGLAFD 193
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 22.6 bits (46), Expect = 7.1
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -2
Query: 215 YLLYKIREALTSLDTPVTFKWVPSHRGIKGNEIVDGIVNSNYDEDHTNSCRVPFTDFLF 39
+LLY L + V + + RG K N + + I + YD D + FT +F
Sbjct: 439 HLLYLASSRLYNWQLRVIYSLLQLFRGKKRNVLRNRIDSYEYDLDQLLLGTILFTVLIF 497
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 158 KWVPSHRGIKGNEIVDGIVNSNYDEDHTNSCRV 60
K V S+ G K NE+ D ++ S+ +HT ++
Sbjct: 142 KEVMSNAGFKDNEVFDILLLSDLVFNHTEHSKL 174
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 11 AKPQTINNGQKESP 52
AKP INNG ++ P
Sbjct: 236 AKPMEINNGYRKKP 249
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 148 GTHLNVTGVSKDVNAS 195
G+HL TG+ DV AS
Sbjct: 229 GSHLTTTGLHTDVYAS 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 930,513
Number of Sequences: 5004
Number of extensions: 15673
Number of successful extensions: 27
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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