Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i11
         (240 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0191 + 15302384-15302422,15302780-15303246,15303356-153035...    26   4.9  
11_04_0205 + 14860857-14861534,14862585-14862975,14863069-148631...    25   6.5  

>03_03_0191 +
           15302384-15302422,15302780-15303246,15303356-15303563,
           15303723-15303794,15304295-15304430,15304619-15304890,
           15305197-15305345,15305818-15305947,15306244-15306258
          Length = 495

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 113 DGIVNSNYDEDHTNSCRVPFTDF 45
           +GIV+ + + DH  +C+V   DF
Sbjct: 81  NGIVSRDVNHDHIENCKVESNDF 103


>11_04_0205 +
           14860857-14861534,14862585-14862975,14863069-14863170,
           14863438-14863682
          Length = 471

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 218 NYLLYKIREALTSLDTPVTFKWVPSHRGIKGNEIVDGIVN 99
           N+  + + EAL S  T    + +P  R   GN+++D I N
Sbjct: 41  NFTSFAVMEALGSALTNKYSEGMPGARYYGGNDVIDEIEN 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,431,078
Number of Sequences: 37544
Number of extensions: 84746
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)