Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i11
         (240 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.       39   8e-04
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    38   0.002
AF032921-1|AAC47810.1|  333|Drosophila melanogaster ribonuclease...    29   0.65 
AY129451-1|AAM76193.1|  787|Drosophila melanogaster RE01517p pro...    28   1.5  
AE014298-1891|AAF48260.1|  787|Drosophila melanogaster CG10617-P...    28   1.5  
AY089374-1|AAL90112.1|  333|Drosophila melanogaster AT19436p pro...    28   2.0  
AE013599-539|AAF59170.1|  333|Drosophila melanogaster CG8729-PA,...    28   2.0  
AE013599-538|AAS64899.1|  314|Drosophila melanogaster CG8729-PB,...    28   2.0  
AE014134-1292|AAF52524.2| 1983|Drosophila melanogaster CG6630-PA...    26   8.1  

>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
          Length = 1227

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -2

Query: 221  NNYLLYKIREALTSLDTPVTFKWVPSHRGIKGNEIVD 111
            N+    ++R  L+S    +T  WVPSH+GI GNE+ D
Sbjct: 1040 NDPTTQEVRHILSSHPKKITLLWVPSHQGIHGNELAD 1076


>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
            protein.
          Length = 1219

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 221  NNYLLYKIREALTSLDTPVTFKWVPSHRGIKGNEIVDGIVNS 96
            N++   +IR  +T     +   W+P H GIKGNE+ D    S
Sbjct: 1025 NSFYPSRIRSLITQHAPKIKIMWIPGHSGIKGNELADQAAKS 1066


>AF032921-1|AAC47810.1|  333|Drosophila melanogaster ribonuclease H1
           protein.
          Length = 333

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -2

Query: 176 DTPVTFKW--VPSHRGIKGNEIVD 111
           D  +T KW  V +H+GI+GNE+ D
Sbjct: 295 DNNITVKWNYVEAHKGIEGNEMAD 318


>AY129451-1|AAM76193.1|  787|Drosophila melanogaster RE01517p
           protein.
          Length = 787

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 191 ALTSLDTPVTFKWVPSHRGIKGNEIVDGIVNSNYDE 84
           ++ SLDT V    VP H G    ++V G +  +Y+E
Sbjct: 518 SVESLDTFVRIYLVPDHPGAMQTKVVKGTLTPSYNE 553


>AE014298-1891|AAF48260.1|  787|Drosophila melanogaster CG10617-PA
           protein.
          Length = 787

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 191 ALTSLDTPVTFKWVPSHRGIKGNEIVDGIVNSNYDE 84
           ++ SLDT V    VP H G    ++V G +  +Y+E
Sbjct: 518 SVESLDTFVRIYLVPDHPGAMQTKVVKGTLTPSYNE 553


>AY089374-1|AAL90112.1|  333|Drosophila melanogaster AT19436p
           protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
 Frame = -2

Query: 167 VTFKW--VPSHRGIKGNEIVD 111
           +T KW  V +H+GI+GNE+ D
Sbjct: 298 ITVKWNYVEAHKGIEGNEMAD 318


>AE013599-539|AAF59170.1|  333|Drosophila melanogaster CG8729-PA,
           isoform A protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
 Frame = -2

Query: 167 VTFKW--VPSHRGIKGNEIVD 111
           +T KW  V +H+GI+GNE+ D
Sbjct: 298 ITVKWNYVEAHKGIEGNEMAD 318


>AE013599-538|AAS64899.1|  314|Drosophila melanogaster CG8729-PB,
           isoform B protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
 Frame = -2

Query: 167 VTFKW--VPSHRGIKGNEIVD 111
           +T KW  V +H+GI+GNE+ D
Sbjct: 279 ITVKWNYVEAHKGIEGNEMAD 299


>AE014134-1292|AAF52524.2| 1983|Drosophila melanogaster CG6630-PA
           protein.
          Length = 1983

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 236 FFHYRNNYLLYKIREALTSLDTPVTFKWVP 147
           F+H   N  L K R+A  + +TP+ + W+P
Sbjct: 857 FYHVSCN--LSKKRDANAAFETPIGYAWLP 884


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,433,826
Number of Sequences: 53049
Number of extensions: 154979
Number of successful extensions: 213
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 24,988,368
effective HSP length: 59
effective length of database: 21,858,477
effective search space used: 437169540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)