Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3i11
(240 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 1.8
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 1.8
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 1.8
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 25 5.4
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 25 5.4
U53338-2|AAA96190.2| 558|Caenorhabditis elegans Ammonium transp... 25 5.4
Z50755-3|CAA90635.1| 182|Caenorhabditis elegans Hypothetical pr... 25 7.2
AF440518-1|AAL34106.1| 155|Caenorhabditis elegans SKR-19 protein. 25 7.2
Z83317-2|CAB05899.1| 470|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z83317-1|CAB05898.1| 510|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr... 25 9.5
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein. 25 9.5
AF022973-2|AAC25800.2| 527|Caenorhabditis elegans Hypothetical ... 25 9.5
AF022973-1|AAT81194.1| 513|Caenorhabditis elegans Hypothetical ... 25 9.5
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 176 DTPVTFKWVPSHRG 135
DT TFKW+P H G
Sbjct: 8941 DTSATFKWLPPHTG 8954
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 176 DTPVTFKWVPSHRG 135
DT TFKW+P H G
Sbjct: 8961 DTSATFKWLPPHTG 8974
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 176 DTPVTFKWVPSHRG 135
DT TFKW+P H G
Sbjct: 8961 DTSATFKWLPPHTG 8974
>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical protein
F59F3.5 protein.
Length = 1199
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 206 YKIREALTSLDTPVTFKWVP 147
Y++RE SLDTP+ +W+P
Sbjct: 1056 YRVRE---SLDTPLPVRWMP 1072
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2
Query: 134 IKGNEIVDGIVNSNYDEDHTNSCRVPFTDFLFDHY*SF 21
++G+ IVDG+++S + ++S DF++ Y +F
Sbjct: 1101 VEGSLIVDGVLSSCFSHLESHSAHKLIFDFIYYVYNAF 1138
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2
Query: 134 IKGNEIVDGIVNSNYDEDHTNSCRVPFTDFLFDHY*SF 21
++G+ IVDG+++S + ++S DF++ Y +F
Sbjct: 1101 VEGSLIVDGVLSSCFSHLESHSAHKLIFDFIYYVYNAF 1138
>U53338-2|AAA96190.2| 558|Caenorhabditis elegans Ammonium
transporter homolog protein4 protein.
Length = 558
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -2
Query: 218 NYLLYKIREALTSLDTPVTFKWVPSHRGIKGNEIVDGIVNSNYDE 84
NY+ Y +++L P+ W +G I G++N++YD+
Sbjct: 122 NYITYC--SVISTLVYPILTHWGWHPKGWMALGITSGVINTHYDD 164
>Z50755-3|CAA90635.1| 182|Caenorhabditis elegans Hypothetical
protein R12H7.3 protein.
Length = 182
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -2
Query: 236 FFHYRNNYLLYKIREALTSLDTPVTFKWVPSHRGIKGNEIVDGIVNSNYDE 84
F R+N +L+ I A P F G EI+DG+VN +E
Sbjct: 95 FLMVRHN-MLFDIIRAARDFTVPGLFAMCCRVVGQNPREIIDGLVNDEEEE 144
>AF440518-1|AAL34106.1| 155|Caenorhabditis elegans SKR-19 protein.
Length = 155
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -2
Query: 236 FFHYRNNYLLYKIREALTSLDTPVTFKWVPSHRGIKGNEIVDGIVNSNYDE 84
F R+N +L+ I A P F G EI+DG+VN +E
Sbjct: 95 FLMVRHN-MLFDIIRAARDFTVPGLFAMCCRVVGQNPREIIDGLVNDEEEE 144
>Z83317-2|CAB05899.1| 470|Caenorhabditis elegans Hypothetical
protein F13G11.1b protein.
Length = 470
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 217 IIYCIKLEKH*HLWILQ*HLNGCPLI 140
I+YC K E H IL+ H CP I
Sbjct: 42 ILYCRKCEGHGEKVILKNHSPQCPYI 67
>Z83317-1|CAB05898.1| 510|Caenorhabditis elegans Hypothetical
protein F13G11.1a protein.
Length = 510
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 217 IIYCIKLEKH*HLWILQ*HLNGCPLI 140
I+YC K E H IL+ H CP I
Sbjct: 82 ILYCRKCEGHGEKVILKNHSPQCPYI 107
>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
C25G4.5 protein.
Length = 1263
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 155 WVPSHRGIKGNEIVDGIVNSNYDEDHTNSCRVPF-TDFLFDHY 30
W+ S G + E + I S+ DE+ + PF DF D+Y
Sbjct: 891 WLLSFSGFRCMENPEPITGSDSDENLRTAVEQPFDDDFANDYY 933
>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
Length = 1263
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 155 WVPSHRGIKGNEIVDGIVNSNYDEDHTNSCRVPF-TDFLFDHY 30
W+ S G + E + I S+ DE+ + PF DF D+Y
Sbjct: 891 WLLSFSGFRCMENPEPITGSDSDENLRTAVEQPFDDDFANDYY 933
>AF022973-2|AAC25800.2| 527|Caenorhabditis elegans Hypothetical
protein F25G6.7a protein.
Length = 527
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 209 LYKIREALTSLDTPVTFKWVPSHR 138
++ I + + S P+T++W PS R
Sbjct: 30 VHPISDGIPSQQRPLTYRWFPSWR 53
>AF022973-1|AAT81194.1| 513|Caenorhabditis elegans Hypothetical
protein F25G6.7b protein.
Length = 513
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 209 LYKIREALTSLDTPVTFKWVPSHR 138
++ I + + S P+T++W PS R
Sbjct: 16 VHPISDGIPSQQRPLTYRWFPSWR 39
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,004,041
Number of Sequences: 27780
Number of extensions: 82552
Number of successful extensions: 167
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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