Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i11
         (240 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   1.2  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   1.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   3.7  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    20   4.9  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    20   4.9  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              19   6.4  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    19   6.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       19   6.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   8.5  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -2

Query: 158 KWVPSHRGIKGNEIVDGIVNSNYDEDHTNSCR 63
           K + ++   K N   +   N+NY+ ++ N+C+
Sbjct: 321 KTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCK 352


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 122 EIVDGIVNSNYDEDHTNSC 66
           E+VDG+    + +DH   C
Sbjct: 49  ELVDGMRRGEFPDDHDLQC 67


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 3.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 154 HLNVTGVSKDVNASL 198
           HL + GVSK +   L
Sbjct: 34  HLQILGVSKQIETGL 48


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 145 EGTHLNVTGVSKDVNASLI 201
           +GT   +TG+SK+    LI
Sbjct: 147 KGTFYPLTGMSKETQQKLI 165


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 145 EGTHLNVTGVSKDVNASLI 201
           +GT   +TG+SK+    LI
Sbjct: 163 KGTFYPLTGMSKETQQKLI 181


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 125 NEIVDGIVNSNYDEDHTNSCR 63
           +E V+ +VN+  D   +NSC+
Sbjct: 93  SEQVNRLVNNCKDITESNSCK 113


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -2

Query: 101 NSNYDEDHTNSCR 63
           N+NY  ++ N+C+
Sbjct: 93  NNNYKYNYNNNCK 105


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 140 RGIKGNEIVDGIVNSNYDEDHTN 72
           RG  GN    G  N N D D  N
Sbjct: 92  RGRGGNRGRTGFNNKNKDGDDNN 114


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 4/13 (30%), Positives = 10/13 (76%)
 Frame = -3

Query: 235 FFTIEIIIYCIKL 197
           F+T+ +I+ C+ +
Sbjct: 237 FYTVNLIVPCVSI 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,883
Number of Sequences: 438
Number of extensions: 1019
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4024224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)