Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i10
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    27   2.6  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    26   3.4  
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce...    26   3.4  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.0  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    25   6.0  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    25   7.9  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   7.9  

>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 64  YEANYKMLIVNNKPLYVDDYDDGVQDRFLIVYTNH 168
           Y+     +++  +P Y DD ++GV D  L  +TN+
Sbjct: 818 YDFMAHRVVITFEPRYSDDTNNGVFDLVLTTHTNY 852


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = +1

Query: 166 HKFVDSVKFAGSVYEHIKSKQFPIES-MYYESLVTPVRLFL---SHVLMYRRDPKTGFVV 333
           H+ +    F      HIK   F + S +  +  +  +++ L   ++V++  R  +    V
Sbjct: 329 HRDLKPENFLVGASGHIKLTDFGLSSGIISKKKIESMKIRLQEVNNVVVPERSMRERRQV 388

Query: 334 YKTLLNNDPMHKHNLM 381
           ++TLL+ DP++ H+++
Sbjct: 389 FRTLLSQDPVYAHSVV 404


>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/71 (18%), Positives = 32/71 (45%)
 Frame = +1

Query: 277 LFLSHVLMYRRDPKTGFVVYKTLLNNDPMHKHNLMCMSTNNSPLYALIYILNIKTVRNAT 456
           LF  + L  + D +    +YK  +++  + KH +  +   +   YA+  ++NI    +  
Sbjct: 34  LFSLNALAKKGDKRAVDAIYKAFIDDSELLKHEMAYVMGQSGQQYAVQPLINIVNDLDQQ 93

Query: 457 ITIGEDKMEEM 489
           + +  +  E +
Sbjct: 94  VMVRHEAAEAL 104


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/68 (20%), Positives = 33/68 (48%)
 Frame = +1

Query: 325 FVVYKTLLNNDPMHKHNLMCMSTNNSPLYALIYILNIKTVRNATITIGEDKMEEMISIAV 504
           F + + L   DP+ + N+    T +  +  +   + +  ++NA  +   D++ E   +A 
Sbjct: 508 FQILENLDAEDPLFRANVHLHMTYDQAIIIMSRPVLLHKMKNAKNSPRVDRINEDCILAA 567

Query: 505 QHLKNFLH 528
           +HL + +H
Sbjct: 568 RHLISLVH 575


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 46  YQGLLKYEANYKMLIVNNKPLYVDDYDDGVQD 141
           Y  L+ +   Y+     N P  VD+ + G++D
Sbjct: 326 YLYLINFHREYRKFFEENAPFSVDEVEPGLED 357


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 346 LNNDPMHKHNLMCMSTNNSPLYALIYILNIKTVRNATIT 462
           L+ND +HK N +  S N+ P   +    N+ T   A +T
Sbjct: 401 LDNDVLHKDNPVEESLNSPPDQPVDNATNVLTSHTAPVT 439


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 501 GNTYHLLHFVFSYCNSSIAHRF 436
           GN YHL  F    CNS +A +F
Sbjct: 132 GNIYHLECFRCHDCNSLVASKF 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,003
Number of Sequences: 5004
Number of extensions: 46486
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)