Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i07
         (218 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    19   6.1  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    19   6.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    19   6.1  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    19   8.1  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 102 D*TNVSEGGIKLYTNSFYR 46
           D ++V   G   Y N FYR
Sbjct: 663 DDSDVGPSGDCFYENKFYR 681


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +1

Query: 25  FQRKLPRPVKRICIQFDSAFTHIGSIEFVPCNASRLK 135
           F+R + R  + +C   D     I       C A RLK
Sbjct: 62  FKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCRACRLK 98


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +1

Query: 25  FQRKLPRPVKRICIQFDSAFTHIGSIEFVPCNASRLK 135
           F+R + R  + +C   D     I       C A RLK
Sbjct: 62  FKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCRACRLK 98


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 18.6 bits (36), Expect = 8.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 6   KTRDAPVSTKTA*T 47
           K + AP+ TKT+ T
Sbjct: 144 KNKSAPILTKTSPT 157


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,637
Number of Sequences: 336
Number of extensions: 929
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 45
effective length of database: 107,465
effective search space used:  2901555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)