Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i07
         (218 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    24   2.4  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    23   4.1  
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    23   5.5  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    23   7.2  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        22   9.6  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    22   9.6  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    22   9.6  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    22   9.6  

>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 65  YNLIPPSLTLVQSNSFLVTPL 127
           Y L+P S ++++S S  V+P+
Sbjct: 411 YKLVPSSESIIESTSVFVSPI 431


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 40  PRPV-KRICIQFDSAFTHIGSIEFV 111
           PR + K++CI    +F+HI  I+F+
Sbjct: 664 PREIAKQLCILEFQSFSHISRIQFL 688


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 16  TRLFQRKLPRPVKRICIQFDSAF 84
           T L++R+  + V  +C  F SAF
Sbjct: 86  TELYERRESKLVSHVCSLFTSAF 108


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 53  KEFVYNLIPPSLTLVQSNSFLVTP 124
           KEF  N+ PP++    S+S ++ P
Sbjct: 28  KEFTSNIPPPTIKTNSSSSNILKP 51


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 10  LGTRLFQRKLPRPVKRICIQFDS 78
           L    F  +LP+   R C+QF+S
Sbjct: 229 LSFHAFTNELPQATLRPCLQFNS 251


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 175 YIHCHFDYKTKF 140
           Y+H H+D+ T+F
Sbjct: 121 YVHIHWDHDTQF 132


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 60  LYTI*FRLHSHWFNRIRSL*RLSSK 134
           L+   FR+H +W  R  +   L+SK
Sbjct: 557 LFCYFFRIHDYWSRRFDTYKTLTSK 581


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 175 YIHCHFDYKTKFCFLD 128
           Y H    Y  KFCF D
Sbjct: 792 YYHLRMAYLEKFCFKD 807


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 893,055
Number of Sequences: 5004
Number of extensions: 14598
Number of successful extensions: 37
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)