Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i07
         (218 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0103 + 16046012-16046018,16046214-16046366,16046908-160471...    28   0.89 
04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692           27   2.1  
03_02_0694 - 10448712-10448996,10449030-10449074,10449588-104496...    26   4.7  
01_07_0229 + 42161770-42164562                                         26   4.7  
05_01_0398 + 3142934-3143110,3143697-3143930,3144180-3144353,314...    25   8.3  

>01_04_0103 +
           16046012-16046018,16046214-16046366,16046908-16047158,
           16047509-16047631,16047818-16047931,16048153-16048315,
           16048867-16049462
          Length = 468

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 199 DINGMVGSYIHCHFDYKT 146
           D NG V S +HCH D KT
Sbjct: 208 DGNGSVASEVHCHHDAKT 225


>04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692
          Length = 1171

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -1

Query: 197 YKWYGW--VLYPLSF-*LQN*VLFFRREALQGTNSIEPM*VKAESNCIQ 60
           + WYGW  V YP +F      +  +  E  QG  +  PM  K E N IQ
Sbjct: 445 FDWYGWVDVSYPFNFSDFCRRMHSYMFEQSQGEYAYMPMNPKPEENIIQ 493


>03_02_0694 -
           10448712-10448996,10449030-10449074,10449588-10449647,
           10449817-10449890,10451056-10451149,10451851-10452023,
           10452526-10452598
          Length = 267

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 170 DIRPNHTIYINNLKKK 217
           DI PN T+Y+ NL +K
Sbjct: 5   DIPPNQTVYLRNLNEK 20


>01_07_0229 + 42161770-42164562
          Length = 930

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 20  ACFNENCLDL*KEFVYNLIPPSL 88
           +C+N   L L + F  N+IPPSL
Sbjct: 502 SCYNLQYLSLQQNFWLNVIPPSL 524


>05_01_0398 +
           3142934-3143110,3143697-3143930,3144180-3144353,
           3144450-3144554,3145274-3145351,3146019-3146100,
           3146519-3146681,3147100-3147435,3147511-3147641,
           3147687-3147729,3147826-3148444,3148523-3148588,
           3149103-3149265,3149557-3149635,3150232-3150431,
           3150972-3151144,3151466-3151559,3152353-3152444,
           3153146-3153436
          Length = 1099

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 179 PNHTIYINNLKKK 217
           PN TIYINNL +K
Sbjct: 867 PNVTIYINNLNEK 879


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,099,668
Number of Sequences: 37544
Number of extensions: 75049
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)