Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i07
         (218 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M15841-1|AAA36796.1|  225|Homo sapiens protein ( Human U2 small ...    36   0.023
BC036737-1|AAH36737.1|  225|Homo sapiens small nuclear ribonucle...    36   0.023
BC018022-1|AAH18022.1|  225|Homo sapiens small nuclear ribonucle...    36   0.023
BC008311-1|AAH08311.1|  109|Homo sapiens Similar to small nuclea...    36   0.023
AL034428-1|CAB38777.2|  225|Homo sapiens small nuclear ribonucle...    36   0.023
X06347-1|CAA29653.1|  282|Homo sapiens protein ( Human mRNA for ...    32   0.38 
M60784-1|AAA61245.1|  282|Homo sapiens U1 snRNP-specific protein...    32   0.38 
BC008290-1|AAH08290.1|  282|Homo sapiens small nuclear ribonucle...    32   0.38 
BC000405-1|AAH00405.1|  282|Homo sapiens small nuclear ribonucle...    32   0.38 

>M15841-1|AAA36796.1|  225|Homo sapiens protein ( Human U2 small
           nuclear RNA-associated B'' antigen mRNA, complete cds.
           ).
          Length = 225

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 167 MDIRPNHTIYINNLKKK 217
           MDIRPNHTIYINN+  K
Sbjct: 1   MDIRPNHTIYINNMNDK 17


>BC036737-1|AAH36737.1|  225|Homo sapiens small nuclear
           ribonucleoprotein polypeptide B'' protein.
          Length = 225

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 167 MDIRPNHTIYINNLKKK 217
           MDIRPNHTIYINN+  K
Sbjct: 1   MDIRPNHTIYINNMNDK 17


>BC018022-1|AAH18022.1|  225|Homo sapiens small nuclear
           ribonucleoprotein polypeptide B'' protein.
          Length = 225

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 167 MDIRPNHTIYINNLKKK 217
           MDIRPNHTIYINN+  K
Sbjct: 1   MDIRPNHTIYINNMNDK 17


>BC008311-1|AAH08311.1|  109|Homo sapiens Similar to small nuclear
           ribonucleoprotein polypeptide B'' protein.
          Length = 109

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 167 MDIRPNHTIYINNLKKK 217
           MDIRPNHTIYINN+  K
Sbjct: 1   MDIRPNHTIYINNMNDK 17


>AL034428-1|CAB38777.2|  225|Homo sapiens small nuclear
           ribonucleoprotein polypeptide B'' protein.
          Length = 225

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 167 MDIRPNHTIYINNLKKK 217
           MDIRPNHTIYINN+  K
Sbjct: 1   MDIRPNHTIYINNMNDK 17


>X06347-1|CAA29653.1|  282|Homo sapiens protein ( Human mRNA for U1
           small nuclear RNP-specific A protein. ).
          Length = 282

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +2

Query: 170 DIRPNHTIYINNLKKK 217
           + RPNHTIYINNL +K
Sbjct: 5   ETRPNHTIYINNLNEK 20


>M60784-1|AAA61245.1|  282|Homo sapiens U1 snRNP-specific protein A
           protein.
          Length = 282

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +2

Query: 170 DIRPNHTIYINNLKKK 217
           + RPNHTIYINNL +K
Sbjct: 5   ETRPNHTIYINNLNEK 20


>BC008290-1|AAH08290.1|  282|Homo sapiens small nuclear
           ribonucleoprotein polypeptide A protein.
          Length = 282

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +2

Query: 170 DIRPNHTIYINNLKKK 217
           + RPNHTIYINNL +K
Sbjct: 5   ETRPNHTIYINNLNEK 20


>BC000405-1|AAH00405.1|  282|Homo sapiens small nuclear
           ribonucleoprotein polypeptide A protein.
          Length = 282

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +2

Query: 170 DIRPNHTIYINNLKKK 217
           + RPNHTIYINNL +K
Sbjct: 5   ETRPNHTIYINNLNEK 20


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,726,154
Number of Sequences: 237096
Number of extensions: 420066
Number of successful extensions: 574
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 76,859,062
effective HSP length: 51
effective length of database: 64,767,166
effective search space used: 1360110486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)