Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3i07
         (218 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M89775-1|AAA28441.1|  216|Drosophila melanogaster small nuclear ...    29   1.2  
L29521-1|AAA28903.1|  216|Drosophila melanogaster nuclear protei...    29   1.2  
AY061491-1|AAL29039.1|  216|Drosophila melanogaster LD45302p pro...    29   1.2  
AE014298-717|AAF46017.1|  216|Drosophila melanogaster CG4528-PA ...    29   1.2  
AE013599-1064|AAM68780.2| 1734|Drosophila melanogaster CG18408-P...    27   4.7  
AB053479-1|BAB62018.1| 1743|Drosophila melanogaster DCAPL2 protein.    27   4.7  
AE014134-2514|AAF53406.2| 1025|Drosophila melanogaster CG12636-P...    26   8.2  

>M89775-1|AAA28441.1|  216|Drosophila melanogaster small nuclear
           ribonucleoprotein protein.
          Length = 216

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 167 MDIRPNHTIYINNLKKK 217
           M++ PN TIYINNL +K
Sbjct: 1   MEMLPNQTIYINNLNEK 17


>L29521-1|AAA28903.1|  216|Drosophila melanogaster nuclear protein
           protein.
          Length = 216

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 167 MDIRPNHTIYINNLKKK 217
           M++ PN TIYINNL +K
Sbjct: 1   MEMLPNQTIYINNLNEK 17


>AY061491-1|AAL29039.1|  216|Drosophila melanogaster LD45302p
           protein.
          Length = 216

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 167 MDIRPNHTIYINNLKKK 217
           M++ PN TIYINNL +K
Sbjct: 1   MEMLPNQTIYINNLNEK 17


>AE014298-717|AAF46017.1|  216|Drosophila melanogaster CG4528-PA
           protein.
          Length = 216

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 167 MDIRPNHTIYINNLKKK 217
           M++ PN TIYINNL +K
Sbjct: 1   MEMLPNQTIYINNLNEK 17


>AE013599-1064|AAM68780.2| 1734|Drosophila melanogaster CG18408-PB,
            isoform B protein.
          Length = 1734

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 84   EGGIKLYTNSFYRSRQFS 31
            +G ++LY++S+YRSR  S
Sbjct: 1088 DGSLELYSDSYYRSRSLS 1105


>AB053479-1|BAB62018.1| 1743|Drosophila melanogaster DCAPL2 protein.
          Length = 1743

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 84   EGGIKLYTNSFYRSRQFS 31
            +G ++LY++S+YRSR  S
Sbjct: 1088 DGSLELYSDSYYRSRSLS 1105


>AE014134-2514|AAF53406.2| 1025|Drosophila melanogaster CG12636-PA
           protein.
          Length = 1025

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 20  ACFNENCLDL*KEFVYNLIPPSLTLVQSNSFLVT 121
           AC N   +DL K FV    P  L LV+ NS+L++
Sbjct: 338 ACMNLQIIDLEKPFVIKFDP--LILVRINSWLMS 369


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,891,985
Number of Sequences: 53049
Number of extensions: 140116
Number of successful extensions: 254
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 24,988,368
effective HSP length: 52
effective length of database: 22,229,820
effective search space used: 444596400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)