Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3i07
(218 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.027
Z46934-4|CAA87042.3| 519|Caenorhabditis elegans Hypothetical pr... 28 0.78
AF068709-8|AAO26015.1| 315|Caenorhabditis elegans Serpentine re... 28 1.0
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 27 2.4
AF068709-7|AAO26014.1| 317|Caenorhabditis elegans Serpentine re... 27 2.4
U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical pr... 26 4.2
AC024805-12|AAK39343.1| 557|Caenorhabditis elegans Hypothetical... 25 5.5
Z19155-4|CAA79560.3| 844|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z77660-9|CAB01179.1| 602|Caenorhabditis elegans Hypothetical pr... 25 9.6
U40798-2|AAQ01525.2| 389|Caenorhabditis elegans Hypothetical pr... 25 9.6
U21310-1|AAA62519.1| 997|Caenorhabditis elegans Hypothetical pr... 25 9.6
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 33.1 bits (72), Expect = 0.027
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 170 DIRPNHTIYINNLKKK 217
DI PNHTIY+NNL +K
Sbjct: 3 DINPNHTIYVNNLNEK 18
>Z46934-4|CAA87042.3| 519|Caenorhabditis elegans Hypothetical
protein ZK1320.4 protein.
Length = 519
Score = 28.3 bits (60), Expect = 0.78
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 28 QRKLPRPVKRICIQFDSAFTHIGSIEFVPC 117
Q+KL ++R CI+ +F H+ ++++ C
Sbjct: 349 QKKLQEEIERECIEPSISFDHLSKLKYMDC 378
>AF068709-8|AAO26015.1| 315|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 59 protein.
Length = 315
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 81 GGIKLYTNSFYRSRQFSL 28
G K+YTNSFYR Q SL
Sbjct: 44 GNSKIYTNSFYRIVQISL 61
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 170 DIRPNHTIYINNLKKK 217
++ PN T+YINNL +K
Sbjct: 3 EVAPNSTLYINNLNEK 18
>AF068709-7|AAO26014.1| 317|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 60 protein.
Length = 317
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 81 GGIKLYTNSFYRSRQFSL 28
G K+YTNSFYR Q SL
Sbjct: 44 GYSKMYTNSFYRIVQISL 61
>U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical
protein C14A11.6 protein.
Length = 597
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -2
Query: 130 DERRYKERIRLNQCE*RRNQIVYKFFLQV*AVFVETGA 17
+E++ +ER++L + N ++ +F + AV ETGA
Sbjct: 267 EEKQIRERLKLGELANVDNGVLEEFISRANAVLKETGA 304
>AC024805-12|AAK39343.1| 557|Caenorhabditis elegans Hypothetical
protein Y51H7C.12 protein.
Length = 557
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Frame = +1
Query: 31 RKLPRPVKRICIQFDSA-----FTHIGSIEFVPCNASRL 132
RK+P+ I + +DS H+ +++F+P + SRL
Sbjct: 245 RKMPKAPYLILVSYDSTNVDVVLNHVCNLQFIPNSLSRL 283
>Z19155-4|CAA79560.3| 844|Caenorhabditis elegans Hypothetical
protein F54G8.5 protein.
Length = 844
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 37 LPRPVKRICIQFDSAFTHIGSIEFVPCNASRL 132
+PRPV +CI F +IG I + +RL
Sbjct: 688 VPRPVSAMCIAFAILSVNIGVIGALAATNTRL 719
>Z77660-9|CAB01179.1| 602|Caenorhabditis elegans Hypothetical
protein F38H4.7 protein.
Length = 602
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 46 PVKRICIQFDSAFTHIGSIEFVPCNASRLKNKT*FCNQND 165
P + + + D I S E+V R++N+ FC +D
Sbjct: 430 PDRPVLVYSDRPRCQISSTEYVVSRFQRIENRWGFCGTSD 469
>U40798-2|AAQ01525.2| 389|Caenorhabditis elegans Hypothetical
protein R13A1.9 protein.
Length = 389
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 192 MVWLGLISIVILITKLSF 139
+VW+GL + + LI LSF
Sbjct: 37 LVWIGLYTAIALIINLSF 54
>U21310-1|AAA62519.1| 997|Caenorhabditis elegans Hypothetical
protein F40H6.2 protein.
Length = 997
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 26 FNENCLDL*KEFVYNLIPPSLTLVQSNSFLVTPLV*KTKLS 148
+ +C D +FVY +P + T+ +S T + + +LS
Sbjct: 779 YTVDCNDAENDFVYGFLPTTTTITKSTVSTTTAPLNRFRLS 819
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,824,935
Number of Sequences: 27780
Number of extensions: 78883
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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