Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3h24
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   352   1e-97
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    39   0.004
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   3.6  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   3.6  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   6.3  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  352 bits (866), Expect = 1e-97
 Identities = 164/244 (67%), Positives = 193/244 (79%)
 Frame = +1

Query: 34  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 213
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 214 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 393
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 394 LCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCM 573
           LCKVK V T  K VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KFE GNL  
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181

Query: 574 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGK 753
           +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP G 
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGA 241

Query: 754 GIRL 765
           GIRL
Sbjct: 242 GIRL 245


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 28/105 (26%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
 Frame = +3

Query: 462 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VGELVYDHGRP*LGACG-HHRVPRETSR 635
           HH  +   +  +  H P  H ++ ++G H    G     H     G  G HH  P     
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518

Query: 636 LLRHCAHQGLHGTHLRHEVEQRVH----NRQGHEGVHLAAARQGH 758
              H  H G HG H         H       GH G H + A  GH
Sbjct: 519 HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGH 563



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
 Frame = +3

Query: 606 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGH 758
           HH    E      H  H G HGTH  H          GH G  H A A  GH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH 576



 Score = 33.1 bits (72), Expect = 0.22
 Identities = 19/53 (35%), Positives = 21/53 (39%)
 Frame = +3

Query: 606 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPP 764
           HHR   E        AH G HGTH  H  E   H+   H G H +     H P
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSP 452



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
 Frame = +3

Query: 576 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAA 746
           HG    G+ G H     T   L H  H G HGTH    H      H+   HE G H   A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAH-HGA 701

Query: 747 RQGH 758
             GH
Sbjct: 702 HHGH 705



 Score = 31.1 bits (67), Expect = 0.90
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = +3

Query: 645 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGH 758
           H AH   HG H RH  E    H+   H G H      GH
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH--GTHHGH 428



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/85 (27%), Positives = 28/85 (32%), Gaps = 1/85 (1%)
 Frame = +3

Query: 507 PVRHCNYEDYGLHQV*VGELVYDHGRP*LGACG-HHRVPRETSRLLRHCAHQGLHGTHLR 683
           P  H ++ ++G H    G     H     G  G HH  P        H +H   HG H  
Sbjct: 536 PAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHES 592

Query: 684 HEVEQRVHNRQGHEGVHLAAARQGH 758
           H          GH G H      GH
Sbjct: 593 HGHGHHAPAHHGHHGEH--GVHHGH 615



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/87 (27%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
 Frame = +3

Query: 507 PVRHCNYEDYGLHQV*VGE-LVYDHGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLR 683
           P  H ++ ++G+H    G      HG    GA  HH  P           H G HG H  
Sbjct: 600 PAHHGHHGEHGVHHGHHGAGYGAHHGHH--GA-HHHHAPHHEHHEHHGDHHHGSHGVHHG 656

Query: 684 HEVEQRVHNRQGHEGVHLAAARQGHPP 764
           H          GH G H       H P
Sbjct: 657 HHGTHHSLAHHGHHGGHGTHHGAHHSP 683



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/44 (29%), Positives = 16/44 (36%)
 Frame = +3

Query: 603 GHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 734
           G H  P        H  H   HG H  H  ++  H+  GH   H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 346 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 477
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 564 LVYDHGRP*LGACGHHRVPRETSRLLRH 647
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 564 LVYDHGRP*LGACGHHRVPRETSRLLRH 647
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 757 CPCRAAARCTPSCP-CRL*TRCS-TSWRRCVP 668
           C C+ A  C P CP   + + CS T  R C+P
Sbjct: 54  CSCQQAPICQPQCPRAEINSDCSATCVRACIP 85


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 503  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 339
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,169,768
Number of Sequences: 27780
Number of extensions: 440580
Number of successful extensions: 1398
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)