Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3h16
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    81   2e-16
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   2.1  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    25   6.4  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   6.4  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    25   6.4  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   8.5  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 34/56 (60%), Positives = 44/56 (78%)
 Frame = +1

Query: 346 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQ 513
           MAKSKNHTNHNQN+KAHRNGIK+P+K R++S    D KF RNQ+F  +G ++  +Q
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEAIRQ 56


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 337 VFNPQGSVLGPLLFLIYINDFPKAIEH 257
           V  PQGS++ P+L  IY++   + IE+
Sbjct: 419 VGTPQGSIVSPILANIYLHQLDEFIEN 445


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 331 NPQGSVLGPLLFLIYINDFPKAIEHPMILFAD 236
           NPQ  +    +F  Y++   ++I   MILF+D
Sbjct: 156 NPQNDMKDATMFWDYLSQNAESIHQVMILFSD 187


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 326  RIENASKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQN 460
            + E+ S+   ++I    TK  KLT    K++ R      LAW+Q+
Sbjct: 997  KFEDLSEKDLKKIEAKATKKKKLTRNEIKAKERRARERELAWLQS 1041


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -2

Query: 331 NPQGSVLGPLLF--LIYINDFPKAIEHP-MILFADDSTVIFTEKELNSLESAIN 179
           NP   +L   L+  L   +   K +E   +IL  +D TVI TEK  NS+++  N
Sbjct: 676 NPSAYILAAQLYTRLKNFDTASKYLEQAKVILGQNDPTVISTEKFYNSIKTQSN 729


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 346 MAKSKNHTNHNQNRKAHRNGIKKPRK 423
           +AK  +  NHN ++ A +  I +PRK
Sbjct: 340 LAKRDDRKNHNHSKPATQANILQPRK 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,469
Number of Sequences: 5004
Number of extensions: 37094
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)