Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3h16
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0115 - 11248021-11248101,11249017-11249118                       84   7e-17
05_03_0661 - 16726958-16726966,16727133-16727234                       57   1e-08
11_06_0341 - 22507098-22507982,22508616-22508783,22518740-225188...    30   1.2  
11_04_0314 - 16277292-16277927,16278385-16278514,16278934-162792...    28   5.0  
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061     28   5.0  
06_03_0336 + 19671500-19672150,19672681-19673301                       27   8.7  

>01_02_0115 - 11248021-11248101,11249017-11249118
          Length = 60

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 37/52 (71%), Positives = 43/52 (82%)
 Frame = +1

Query: 346 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 501
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST GMDPKFLRNQR+ +K N K
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKK 52


>05_03_0661 - 16726958-16726966,16727133-16727234
          Length = 36

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = +1

Query: 346 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 453
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST G +
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGFE 36


>11_06_0341 -
           22507098-22507982,22508616-22508783,22518740-22518893,
           22519396-22519728,22521106-22521374
          Length = 602

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/38 (31%), Positives = 27/38 (71%)
 Frame = +3

Query: 153 HSITSLRVVLIADSKEFNSFSVNMTVLSSAKRIIGCSM 266
           H++T L+ + I + K+F+S +++  +LS+ + + GCS+
Sbjct: 366 HNLTKLKKLSIYNVKDFDSKNLSHELLSAIEYLTGCSL 403


>11_04_0314 -
           16277292-16277927,16278385-16278514,16278934-16279217,
           16279308-16279431,16280442-16280530,16280630-16280706,
           16280790-16280922,16282131-16282211,16282372-16282539
          Length = 573

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +2

Query: 209 FFCKYDGAIIGKEN---HRMFYGFREVININ*KKERP*YAALRIENASKWQSQRIIQIIT 379
           F   YDG      N   HR++YGFR  I  N K   P +       A++++ +R+ Q++ 
Sbjct: 436 FIPTYDGPSNFANNLMGHRLYYGFRTTITPNRKALAPIFMDREEGRAARFE-ERVRQVMF 494

Query: 380 KT 385
            T
Sbjct: 495 NT 496


>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
          Length = 691

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 409 KKPRKTRHESTLGMDPKFLRNQ-RFCKKG 492
           +KP K R    L +  +F+R+Q + CKKG
Sbjct: 454 RKPTKPRQRGKLKLQSQFIRDQNKICKKG 482


>06_03_0336 + 19671500-19672150,19672681-19673301
          Length = 423

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 444 WHGSKIFKESKVLQEG*PEASQATREGG 527
           WH    FK S+    G PEA+ A  EGG
Sbjct: 223 WHEINQFKSSEKSLVGMPEAAAAEEEGG 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,640,859
Number of Sequences: 37544
Number of extensions: 222796
Number of successful extensions: 545
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)