Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3h16
         (599 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    40   5e-05
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    34   0.004
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    33   0.007
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           29   0.087
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    29   0.11 
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    29   0.15 
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    27   0.46 
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    27   0.61 
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    27   0.61 
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    25   2.5  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   2.5  
X87411-1|CAA60858.1|  599|Anopheles gambiae maltase-like protein...    24   4.3  
DQ989013-1|ABK97614.1|  378|Anopheles gambiae gustatory receptor...    23   7.5  
AY994092-1|AAX86005.1|   57|Anopheles gambiae hyp3.5 precursor p...    23   7.5  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   7.5  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    23   10.0 

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 40.3 bits (90), Expect = 5e-05
 Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
 Frame = -2

Query: 328 PQGSVLGPLLFLIYINDFPKAIEHPMI-LFADDSTV 224
           PQGS +GPLLF+++IND   A+    I LFADD+ +
Sbjct: 744 PQGSNIGPLLFILFINDVTLALPPDSISLFADDAKI 779


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 33.9 bits (74), Expect = 0.004
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -2

Query: 328 PQGSVLGPLLFLIYINDFPKAIEH---PMILFADDSTVIFTEKELNSLESAINTTL 170
           PQGSVLGP L+ +  N+      +    +I FADD  ++     ++ LE+ I T++
Sbjct: 611 PQGSVLGPTLWNLMYNEVLGLTLYDGASLIGFADDIVLVAVGSRIDDLENTIETSI 666


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 33.1 bits (72), Expect = 0.007
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = -2

Query: 328 PQGSVLGPLLFLIYINDFPKAI-EHPMILFADDSTV---IFTEKELNSLESAIN 179
           PQG VL PLLF ++IND    +     +L+ADD  +   + +  +  SL+  +N
Sbjct: 673 PQGCVLSPLLFSLFINDVCNVLPPDGHLLYADDIKIFLPVSSSSDCMSLQHYLN 726


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 29.5 bits (63), Expect = 0.087
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = -2

Query: 328 PQGSVLGPLLF-LIY--INDFPKAIEHPMILFADDSTVIFTEKELNSLESA 185
           PQGS+LGP L+  +Y  + D     +  M+ +ADD  ++    ++N++++A
Sbjct: 694 PQGSILGPTLWNTMYDGVLDVALPQDCEMVAYADDLVLLIPGIDVNAVKAA 744


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 29.1 bits (62), Expect = 0.11
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
 Frame = -2

Query: 328 PQGSVLGPLLF-LIYINDFPKA-IEHPMIL-FADDSTVIFTEKELNSLESAINTTLKXXX 158
           PQGSVLGP L+ L+Y      A +E   I+ +ADD  ++     ++ +E  +++ ++   
Sbjct: 606 PQGSVLGPTLWNLMYDGVLRVAMVEGARIIGYADDIVLLVEGNCVDDIEILVSSQIRIID 665

Query: 157 XXXXXXXXXXXXNKTK--IVTYPQEIQH 80
                        KT+  +V+  Q IQH
Sbjct: 666 RWMTDNGLKIAPTKTEFIMVSSHQRIQH 693


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 28.7 bits (61), Expect = 0.15
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
 Frame = -2

Query: 328 PQGSVLGPLLFLIYIND---FP-KAIEHPMILFADDSTVIF---TEKELNSLESA 185
           PQGSVLGP L+ +  +D    P + +   +I FADD    F   T +++++L +A
Sbjct: 622 PQGSVLGPTLWNVMYDDLLRLPLEGLRADIIGFADDVAFTFLGRTTEQVSALATA 676


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 27.1 bits (57), Expect = 0.46
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = -2

Query: 328 PQGSVLGPLLF-LIY--INDFPKAIEHPMILFADDSTVI 221
           PQGS+LGP L+ ++Y  + D P   +  +I +ADD  ++
Sbjct: 687 PQGSILGPTLWNIMYDGVLDVPLPPDVEVIGYADDLALL 725


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 26.6 bits (56), Expect = 0.61
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
 Frame = -2

Query: 328 PQGSVLGPLLFLIYINDFPKAIEHP---MILFADDSTVIFTEKELNSLESAINTTLKXXX 158
           PQGS+LGP L+ +  N        P   +I FADD  +    + +  +E   + ++    
Sbjct: 602 PQGSILGPTLWNVMYNGVLTLGLPPGPEVIGFADDIALTVLGESIEEIELLTSDSVSRIE 661

Query: 157 XXXXXXXXXXXXNKTK-IVTYPQEIQHSXKXXYDGTRIEEVXSTKFHG 17
                        KT+ ++    +   S        RIE +   K+ G
Sbjct: 662 SWMQQMRLEIAHKKTEFLIISSHKTVQSGSIRVGDERIESIRHLKYLG 709


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 26.6 bits (56), Expect = 0.61
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -2

Query: 328 PQGSVLGPLLF-LIY--INDFPKAIEHPMILFADDSTVI 221
           PQGS+LGP L+ ++Y  +   P   E  +I +ADD  V+
Sbjct: 646 PQGSILGPTLWNVMYDGVLRIPLPDEAKVIGYADDLVVL 684


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = -2

Query: 328 PQGSVLGPLLFLIYIN-----DFPKAIEHPMILFADD 233
           PQGS+LGP L+ +  +       P+  E  +I FADD
Sbjct: 647 PQGSILGPTLWNVMYDSVLDVQLPEGAE--IIAFADD 681


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = -2

Query: 328 PQGSVLGPLLFLIYINDFPKAIEHP----MILFADDSTVI 221
           PQGS+LGP L+ I + D    +E P    +I +ADD  V+
Sbjct: 633 PQGSILGPTLWNI-MYDGVLRVELPEGASVIGYADDIVVM 671


>X87411-1|CAA60858.1|  599|Anopheles gambiae maltase-like protein
           Agm2 protein.
          Length = 599

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -3

Query: 462 KFWI-HAKGGF-VPGLPWLFDTI 400
           +FW+     GF +  +PWLF+T+
Sbjct: 206 RFWLDQGVDGFRIDAVPWLFETV 228


>DQ989013-1|ABK97614.1|  378|Anopheles gambiae gustatory receptor 24
           protein.
          Length = 378

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 595 YAFICLYLMFI 563
           + FICLYL FI
Sbjct: 232 FTFICLYLFFI 242


>AY994092-1|AAX86005.1|   57|Anopheles gambiae hyp3.5 precursor
           protein.
          Length = 57

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 470 FLKNFGSMPRVDSCLVFLGF 411
           FLK  GS PR   C++ +GF
Sbjct: 2   FLK--GSFPRFQMCVMLIGF 19


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -2

Query: 328 PQGSVLGPLLF-LIYINDFPKAIE--HPMILFADDSTVI 221
           PQGS+LGP L+ ++Y   F   +     +I +ADD  ++
Sbjct: 702 PQGSILGPTLWNMMYDGVFGVGLPLGAEIIGYADDLVLL 740


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 328 PQGSVLGPLLF 296
           PQGS+LGP L+
Sbjct: 627 PQGSILGPTLW 637


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,668
Number of Sequences: 2352
Number of extensions: 8442
Number of successful extensions: 44
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)