Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3h16
(599 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40226-1|AAB01760.1| 76|Drosophila melanogaster L43 protein. 95 6e-20
AE013599-3176|AAF46708.1| 76|Drosophila melanogaster CG10071-P... 95 6e-20
AE013599-3175|AAM70864.1| 76|Drosophila melanogaster CG10071-P... 95 6e-20
AE013599-3174|AAM70863.1| 76|Drosophila melanogaster CG10071-P... 95 6e-20
AY075553-1|AAL68360.1| 56|Drosophila melanogaster RH58777p pro... 84 2e-16
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 48 1e-05
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 48 1e-05
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 42 6e-04
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 41 0.001
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 41 0.001
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 41 0.001
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 35 0.097
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 33 0.30
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 33 0.30
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 33 0.30
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 33 0.30
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 33 0.30
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 33 0.30
AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p pro... 32 0.52
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 31 0.91
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 31 1.2
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 31 1.2
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 31 1.2
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 31 1.2
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 31 1.2
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 31 1.2
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 30 2.8
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 30 2.8
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 30 2.8
AY118286-1|AAM48315.1| 198|Drosophila melanogaster AT16443p pro... 29 6.4
AE014297-506|AAS65120.1| 777|Drosophila melanogaster CG31481-PB... 29 6.4
AE013599-3399|AAM68226.1| 198|Drosophila melanogaster CG10344-P... 29 6.4
AE013599-3398|AAF46848.2| 278|Drosophila melanogaster CG10344-P... 29 6.4
>U40226-1|AAB01760.1| 76|Drosophila melanogaster L43 protein.
Length = 76
Score = 95.1 bits (226), Expect = 6e-20
Identities = 41/51 (80%), Positives = 46/51 (90%)
Frame = +1
Query: 346 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNL 498
MAKSKNHTNHNQN+KAHRNGIK+P + RHESTLGMD KFL NQR+ +KGNL
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGNL 51
>AE013599-3176|AAF46708.1| 76|Drosophila melanogaster CG10071-PC,
isoform C protein.
Length = 76
Score = 95.1 bits (226), Expect = 6e-20
Identities = 41/51 (80%), Positives = 46/51 (90%)
Frame = +1
Query: 346 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNL 498
MAKSKNHTNHNQN+KAHRNGIK+P + RHESTLGMD KFL NQR+ +KGNL
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGNL 51
>AE013599-3175|AAM70864.1| 76|Drosophila melanogaster CG10071-PB,
isoform B protein.
Length = 76
Score = 95.1 bits (226), Expect = 6e-20
Identities = 41/51 (80%), Positives = 46/51 (90%)
Frame = +1
Query: 346 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNL 498
MAKSKNHTNHNQN+KAHRNGIK+P + RHESTLGMD KFL NQR+ +KGNL
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGNL 51
>AE013599-3174|AAM70863.1| 76|Drosophila melanogaster CG10071-PA,
isoform A protein.
Length = 76
Score = 95.1 bits (226), Expect = 6e-20
Identities = 41/51 (80%), Positives = 46/51 (90%)
Frame = +1
Query: 346 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNL 498
MAKSKNHTNHNQN+KAHRNGIK+P + RHESTLGMD KFL NQR+ +KGNL
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGNL 51
>AY075553-1|AAL68360.1| 56|Drosophila melanogaster RH58777p
protein.
Length = 56
Score = 83.8 bits (198), Expect = 2e-16
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = +1
Query: 346 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRF 480
MAKSKNHTNHNQN+KAHRNGIK+P + RHESTLGMD KFL NQ +
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQHY 45
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFPKAIEHPMILFADDSTVI---FTEKELN-SLESAIN 179
PQGSVLGP LF I+ +D P+A + LFADD+ V F+ E+N S++S +N
Sbjct: 667 PQGSVLGPTLFNIFTHDIPQATNCVLSLFADDAAVYSAGFSYSEINQSMQSYLN 720
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFPKAIEHPMILFADDSTVI---FTEKELN-SLESAIN 179
PQGSVLGP LF I+ +D P+A + LFADD+ V F+ E+N S++S +N
Sbjct: 615 PQGSVLGPTLFNIFTHDIPQATNCVLSLFADDAAVYSAGFSYSEINQSMQSYLN 668
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 41.9 bits (94), Expect = 6e-04
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFPKAIEHPMILFADDSTVI 221
PQGSVLGP+L+ +Y D P + + FADD+ +I
Sbjct: 178 PQGSVLGPILYTLYTADIPTNYQLTIFTFADDTAII 213
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFPKAIEHPMILFADDSTVIFTEK 209
PQGSVLGP+L+ +Y DFP FADD+ ++ K
Sbjct: 637 PQGSVLGPILYTLYTADFPIDYNLTTSTFADDTAILSRSK 676
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFPKAIEHPMILFADDSTVIFTEK 209
PQGSVLGP+L+ +Y DFP FADD+ ++ K
Sbjct: 637 PQGSVLGPILYTLYTADFPIDYNLTTSTFADDTAILSRSK 676
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFPKAIEHPMILFADDSTVI 221
PQGSVLGP L+LIY D P + FADD+ ++
Sbjct: 639 PQGSVLGPTLYLIYTADIPTNSRLTVSTFADDTAIL 674
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 34.7 bits (76), Expect = 0.097
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFPKAI-----EHPMILFADDSTVIFTEK 209
PQGSVLGPLL+ +Y +D P+ + + FADD V + +
Sbjct: 641 PQGSVLGPLLYCLYSHDMPQPDVSLYGKSMLATFADDVCVTYRSR 685
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 33.1 bits (72), Expect = 0.30
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFP------KAIEHPMIL--FADDSTVIFTEKELNSLESAINTT 173
PQGSVLGP L+ ++ +D P + E +++ +ADD+ V+ K + + S +
Sbjct: 643 PQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEY 702
Query: 172 L 170
L
Sbjct: 703 L 703
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 33.1 bits (72), Expect = 0.30
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFP------KAIEHPMIL--FADDSTVIFTEKELNSLESAINTT 173
PQGSVLGP L+ ++ +D P + E +++ +ADD+ V+ K + + S +
Sbjct: 445 PQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEY 504
Query: 172 L 170
L
Sbjct: 505 L 505
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 33.1 bits (72), Expect = 0.30
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFPKAI 263
PQGS+LGP+L+ IY +D P I
Sbjct: 243 PQGSILGPVLYSIYSSDMPYPI 264
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 33.1 bits (72), Expect = 0.30
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFPKAI 263
PQGS+LGP+L+ IY +D P I
Sbjct: 690 PQGSILGPVLYSIYSSDMPYPI 711
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 33.1 bits (72), Expect = 0.30
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFPKAI 263
PQGS+LGP+L+ IY +D P I
Sbjct: 690 PQGSILGPVLYSIYSSDMPYPI 711
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 33.1 bits (72), Expect = 0.30
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFPKAI 263
PQGS+LGP+L+ IY +D P I
Sbjct: 690 PQGSILGPVLYSIYSSDMPYPI 711
>AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p
protein.
Length = 184
Score = 32.3 bits (70), Expect = 0.52
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Frame = -2
Query: 328 PQGSVLGPLLF-LIY--INDFPKAIEHPMILFADDSTVIFTEKELNSLESAINTTLKXXX 158
PQGSVLGPLL+ +Y I P ++ FADD ++ +K E N ++
Sbjct: 52 PQGSVLGPLLWNTMYDGILRLPLVGRSEIVGFADDVALLVVDKYPGKAEEMCNRNIRAIE 111
Query: 157 XXXXXXXXXXXXNKTKIV 104
KTK V
Sbjct: 112 HWLSSMGLELAPEKTKAV 129
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 31.5 bits (68), Expect = 0.91
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFP 272
PQGSVLGPLL+ ++ D P
Sbjct: 642 PQGSVLGPLLYSVFTADLP 660
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFP-KAIEHP-------MILFADDSTVIFTE 212
PQGS LGP+L+ I+ +D P I HP + +ADD+ V+ ++
Sbjct: 571 PQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSD 617
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFP-KAIEHP-------MILFADDSTVIFTE 212
PQGS LGP+L+ I+ +D P I HP + +ADD+ V+ ++
Sbjct: 687 PQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSD 733
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFP-KAIEHP-------MILFADDSTVIFTE 212
PQGS LGP+L+ I+ +D P I HP + +ADD+ V+ ++
Sbjct: 687 PQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSD 733
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFP-KAIEHP-------MILFADDSTVIFTE 212
PQGS LGP+L+ I+ +D P I HP + +ADD+ V+ ++
Sbjct: 649 PQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSD 695
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFP-KAIEHP-------MILFADDSTVIFTE 212
PQGS LGP+L+ I+ +D P I HP + +ADD+ V+ ++
Sbjct: 687 PQGSNLGPILYSIFSSDMPLPHIYHPSPTERIMLSTYADDTIVLSSD 733
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDF-----PKAIEHPMILFADDSTVIFTEKELNSLESAINTTLKX 164
PQGSVLGP+L+ I + P+ +E + FADD + K + L+ N +
Sbjct: 614 PQGSVLGPILWNIMYDGILSISKPRGVE--LHCFADDVAITAVAKTIPELQDISNVAITA 671
Query: 163 XXXXXXXXXXXXXXNKTKIV 104
+KT++V
Sbjct: 672 AIEWLEKVGLKIAAHKTEVV 691
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFP 272
PQGS LGPLL+ I+ +D P
Sbjct: 687 PQGSNLGPLLYSIFSSDMP 705
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFP 272
PQGS LGPLL+ I+ +D P
Sbjct: 699 PQGSNLGPLLYSIFSSDMP 717
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Frame = -2
Query: 328 PQGSVLGPLLFLIYINDFPKAI-EHPMI---LFADDSTVIFTE-KELNSL 194
PQGS L +LF+I I D + H I L+ADD+ +IFT+ K +N++
Sbjct: 642 PQGSPLSVVLFMIAIEDINDIVTRHKDIYISLYADDA-IIFTKIKNINTV 690
>AY118286-1|AAM48315.1| 198|Drosophila melanogaster AT16443p
protein.
Length = 198
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 215 CKYDGAIIGKENHRMFYGF 271
C Y G IG NHR F GF
Sbjct: 121 CIYTGCCIGLRNHRFFMGF 139
>AE014297-506|AAS65120.1| 777|Drosophila melanogaster CG31481-PB,
isoform B protein.
Length = 777
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 343 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST--LGMDPKFLRNQRFCKKGNLKPAKQL 516
K K+ N+NQ + +NG+ + +T + +T L ++ +F N+ C+ ++ A L
Sbjct: 171 KKTSRKSSNNNNQGDNSIKNGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASL 230
>AE013599-3399|AAM68226.1| 198|Drosophila melanogaster CG10344-PA,
isoform A protein.
Length = 198
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 215 CKYDGAIIGKENHRMFYGF 271
C Y G IG NHR F GF
Sbjct: 121 CIYTGCCIGLRNHRFFMGF 139
>AE013599-3398|AAF46848.2| 278|Drosophila melanogaster CG10344-PB,
isoform B protein.
Length = 278
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 215 CKYDGAIIGKENHRMFYGF 271
C Y G IG NHR F GF
Sbjct: 121 CIYTGCCIGLRNHRFFMGF 139
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,247,617
Number of Sequences: 53049
Number of extensions: 377166
Number of successful extensions: 1203
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2441585082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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