Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3h13
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   1.2  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   2.1  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   4.9  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    25   4.9  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   6.5  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   6.5  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   6.5  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    24   8.6  

>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 121 SREIIQGNNYIVQYSWFCMGLYSSAILAVSVYSWCRISACCHSYCS 258
           +R +++ N Y +    F + +    +L V +  + RI  CC S CS
Sbjct: 14  NRNLLEANKYKLSEITFKVYISIRRLLIVVITLYRRIVECCASLCS 59


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 10/44 (22%), Positives = 26/44 (59%)
 Frame = +1

Query: 88  TNPHRLRRTSKSREIIQGNNYIVQYSWFCMGLYSSAILAVSVYS 219
           T+P+ L + ++   +++ N Y+VQ     + LY++++ +   Y+
Sbjct: 261 THPNVLDKWNEFISLLKSNGYLVQEIQLPISLYANSVYSTMAYA 304


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 133 IQGNNYIVQYSWFCMGLYSSAILAVSVYSWC 225
           + G+N  V+ SWF M  Y   + + +V  +C
Sbjct: 304 LYGSNEEVENSWFHMHFYPPLLRSATVKKFC 334


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 422 FFYLLTIGYI*EVKVVQTNFEIMDFTSFL 336
           FF  LTIGYI  + +V T+F + + +  L
Sbjct: 294 FFVGLTIGYIKVIPMVSTSFFVYNHSKAL 322


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 244 HSYCSSMANVPT-QSSELAGS*ER**QTSSQERKEVKSIISKFVCTTFTSQIYP 402
           H Y  S  NVPT  SS    S +   Q+  Q      S +S F  + F S+++P
Sbjct: 157 HQYLQSNHNVPTNNSSSATSSTKPSVQSVGQASYPFLSSVSNFP-SNFNSELFP 209


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
 Frame = +1

Query: 166 WFCMGLYSSAILAVSVYSW---CRISACCHSYC 255
           W C   Y   + ++S  SW   CR S   H  C
Sbjct: 15  WICYEEYDKKLCSLSNDSWRRPCRCSLIAHESC 47


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 71  DFFTSIPTHIDYVGQAKAEKL 133
           D ++ +P++++Y   AKAEKL
Sbjct: 843 DTWSRLPSNLEYCSWAKAEKL 863


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 163 SWFCMGLYSSAILAVSVYSWCRISACCHSYCSSMANV 273
           S F +G Y++AI +  VYS    S+C       ++N+
Sbjct: 72  SAFLLGSYTAAISSPGVYSMMTPSSCLSLLNPLLSNI 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,201
Number of Sequences: 5004
Number of extensions: 30420
Number of successful extensions: 71
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)