Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3h06
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun...   104   8e-24
SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera...    71   1e-13
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    29   0.66 
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    28   0.87 
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom...    27   1.5  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    26   4.7  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   6.2  

>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
           Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score =  104 bits (250), Expect = 8e-24
 Identities = 50/105 (47%), Positives = 67/105 (63%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
           MN P  +E   L  G  KV  E D+K  NAA+ T+ KEDHTL NM+ +QLL D +VLFAG
Sbjct: 1   MNQPERYELIELM-GLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAG 59

Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERF 478
           YK+PHPL H F+LR+QT  D +P++  ++A   L + L   +  F
Sbjct: 60  YKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIKVNF 104


>SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase
           I and III subunit Rpc19 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 32/77 (41%), Positives = 43/77 (55%)
 Frame = +2

Query: 260 FTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAIT 439
           F + KEDHTLGN +R+ ++K+P+V F GY IPHP E K   RIQT    T  +     + 
Sbjct: 37  FQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLD 96

Query: 440 DLTSELSLFEERFKEAI 490
           DL        E+F E +
Sbjct: 97  DLIDLCDAVTEKFTEQL 113


>SPBC17D11.05 |tif32||translation initiation factor
            eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
 Frame = +2

Query: 185  ESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVL--FAGYKIPH 358
            E+  L++ + K Q E D ++     +   K+   +      Q +KD K    FA Y    
Sbjct: 692  EAIPLWEEDAKQQAEHDREI----FYEREKQRKEVQERKHEQAIKDKKAFAQFASYI--- 744

Query: 359  PLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELS-----LFEERFKEAIKEKKE 505
               H +   I    D   QEA+  A   + +E       +FE++  EAI+E +E
Sbjct: 745  ---HAYKQNIDDERDKAYQEAYAKAKNVIDAERERQRKEIFEQKLAEAIREAEE 795


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 170 APPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQL--LKDPKVLFAG 343
           AP +  + LL    K  +KE+ T +  + I   N  D+   +M+ HQ+  L  P VL   
Sbjct: 153 APGSKTAQLLEALHKPTKKEDITTLLPSGIVIANDSDNKRAHMLVHQIKRLNSPNVLIVN 212

Query: 344 Y 346
           +
Sbjct: 213 H 213


>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 311 LLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMN 430
           L K PK++ + +++P   E KFV+ ++        E+++N
Sbjct: 41  LTKIPKIISSSFELPSYFEKKFVMGLKKDELVENSESYIN 80


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 224 KEEDTKV-TNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGY 346
           KEE  ++ ++ A+  +NK  HT GN  R  ++   K +   Y
Sbjct: 93  KEEILELPSDGAVIEINKTHHTWGNYFRCSMIVAHKYILEKY 134


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 374 FVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEA 487
           + + + T  DY    +   A+ D+TS +S F++ F+ A
Sbjct: 361 YTILVNTLHDYIKVISIDEALLDITSSVSSFQDCFEIA 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,686
Number of Sequences: 5004
Number of extensions: 33655
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)