Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3h06
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   3.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   5.1  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   6.7  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   6.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +1

Query: 283 HTW*HDQTSTAEGPKSPLCRLQDTTSIGT*ICTQNSNNIRLYTTGSVH 426
           + W H +T     P+   C      ++    C +NSNN  + T G+ +
Sbjct: 188 YNWEHKETHIDWQPEDEECTEATAGAVVLETCQRNSNNSTI-TAGNAN 234


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 134 SKKFDNEFVVMNAPPTFESFLLYDG 208
           SK FDN+          ESF ++DG
Sbjct: 229 SKTFDNDLRYSELAVAGESFTVHDG 253


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 118 RNPNKAIFSXFYQTXSSQXNYKXNNXFIKSYNRVTYXK 5
           R P K I S   +T  +  NYK N     +YN   Y K
Sbjct: 77  REP-KIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNK 113


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 118 RNPNKAIFSXFYQTXSSQXNYKXNNXFIKSYNRVTY 11
           R P K I S   +T  +  NY  NN    +YN   Y
Sbjct: 77  REP-KIISSLSNKTIHNNNNYNNNNYNNYNYNNNNY 111


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 181 CRRCIHDYKFVIKFFGLKILQRNPNKAIFSXF 86
           CR CIH   F + F+ L       N  I++ F
Sbjct: 35  CRNCIHPTVFSVLFW-LGYCNSAINPCIYALF 65


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 181 CRRCIHDYKFVIKFFGLKILQRNPNKAIFSXF 86
           CR CIH   F + F+ L       N  I++ F
Sbjct: 483 CRNCIHPTVFSVLFW-LGYCNSAINPCIYALF 513


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,149
Number of Sequences: 438
Number of extensions: 2348
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)