Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3h05
(410 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-50|CAD56259.3| 837|Caenorhabditis elegans Hypothetical p... 29 1.7
Z50005-1|CAA90294.1| 334|Caenorhabditis elegans Hypothetical pr... 28 2.3
AL031635-11|CAA21038.3| 446|Caenorhabditis elegans Hypothetical... 27 5.3
Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical p... 26 9.2
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr... 26 9.2
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri... 26 9.2
AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical ... 26 9.2
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ... 26 9.2
>Z99281-50|CAD56259.3| 837|Caenorhabditis elegans Hypothetical
protein Y57G11C.37 protein.
Length = 837
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 145 FXEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVF 258
F E I F LLF L C LIN LI ++ F
Sbjct: 626 FLEMFIQFGYVLLFSPAFPLAAVCALINNLIEIRVDAF 663
>Z50005-1|CAA90294.1| 334|Caenorhabditis elegans Hypothetical
protein F16H9.2 protein.
Length = 334
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = +1
Query: 79 HYSNAHAKXTLATLFANRNHSSFXEYAITFVSTLL----FKNNLNLMVACNLINTLINFE 246
H++ K + + AN+N+ SF F T+ NL + C L+N LI E
Sbjct: 173 HFTQVILKSAVISYNANQNYMSFPNKIDIFPETVTEGTSISVNLQNRIRCRLVNRLI--E 230
Query: 247 INVFGKSLLL 276
+ V + +LL
Sbjct: 231 LKVTHEEMLL 240
>AL031635-11|CAA21038.3| 446|Caenorhabditis elegans Hypothetical
protein Y47D3B.3 protein.
Length = 446
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 253 VFGKSLLLSKFVNFCIANSDGVTIQHKMLTNVL 351
+FG++ L+SK++ CI+ D I K+ T ++
Sbjct: 15 IFGQNFLISKYLRTCISLLDPQLIDLKLQTRMV 47
>Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical
protein C18D4.2b protein.
Length = 1376
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 298 IANSDGVTIQHKMLTNVLSFLLEKY 372
I NS+G +Q++ LTN+ +EKY
Sbjct: 154 IDNSNGNNLQNQELTNIFGDSIEKY 178
>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical
protein C18D4.2a protein.
Length = 1817
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 298 IANSDGVTIQHKMLTNVLSFLLEKY 372
I NS+G +Q++ LTN+ +EKY
Sbjct: 154 IDNSNGNNLQNQELTNIFGDSIEKY 178
>Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical
protein C18D4.2b protein.
Length = 1376
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 298 IANSDGVTIQHKMLTNVLSFLLEKY 372
I NS+G +Q++ LTN+ +EKY
Sbjct: 154 IDNSNGNNLQNQELTNIFGDSIEKY 178
>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical
protein C18D4.2a protein.
Length = 1817
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 298 IANSDGVTIQHKMLTNVLSFLLEKY 372
I NS+G +Q++ LTN+ +EKY
Sbjct: 154 IDNSNGNNLQNQELTNIFGDSIEKY 178
>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
protein 2 protein.
Length = 1262
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 244 EINVFGKSLLLSKFVNFCIANSDGVTIQH-KMLTNVLSF 357
++ +G L++ F+N C A S + QH K +T +L +
Sbjct: 888 QVYYWGSKSLMAAFMNICNAYSQCIGTQHLKAITRLLHY 926
>AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical
protein Y54G2A.38 protein.
Length = 520
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 76 LHYSNAHAKXTLATLFA-NRNHSSFXEYAITFVSTLLFKNNLNLMVACNLINT 231
LH+ NA+ + + TL A NR S F + + ++LF +L ++ + T
Sbjct: 98 LHFGNAYFQYFMVTLMAVNRTTSIFFYFVNEKIWSILFPLSLGAVILVEVFFT 150
>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
protein.
Length = 1262
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 244 EINVFGKSLLLSKFVNFCIANSDGVTIQH-KMLTNVLSF 357
++ +G L++ F+N C A S + QH K +T +L +
Sbjct: 888 QVYYWGSKSLMAAFMNICNAYSQCIGTQHLKAITRLLHY 926
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,580,540
Number of Sequences: 27780
Number of extensions: 126485
Number of successful extensions: 309
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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