Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3h03
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0885 + 6966700-6966979,6967930-6968110,6968224-6968365,696... 31 0.70
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 31 0.93
05_06_0144 - 25973635-25973801,25973878-25973947,25974049-259741... 30 1.2
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273... 29 2.8
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 29 2.8
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 28 5.0
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528... 28 5.0
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 28 5.0
03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419 28 6.5
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 27 8.7
08_02_0755 - 20814074-20814268,20814909-20814965,20815047-208151... 27 8.7
02_05_1127 + 34292894-34293284,34293948-34295443 27 8.7
>01_01_0885 +
6966700-6966979,6967930-6968110,6968224-6968365,
6968448-6968517,6968617-6968783
Length = 279
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 465 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTL 602
LR++ L D+ L LW L+ +G+C N +TL+ + ++ L T+
Sbjct: 187 LRQIALGRDIKKFLIVIAGLWLLSVLGSCCNFLTLVYIVFVVLHTV 232
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 468 RRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTL 602
R + L DL L V LW L+ VG+C + +TLI + + L T+
Sbjct: 174 REIALGHDLKKFLGVIVALWVLSEVGSCCDFLTLIYVAVLMLHTV 218
>05_06_0144 -
25973635-25973801,25973878-25973947,25974049-25974190,
25974647-25974827,25975248-25975443
Length = 251
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 465 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTL 602
LR + DL L V LW L+ +G+C N +TL + ++ L+T+
Sbjct: 159 LREIGQGHDLKKFLIVVVGLWVLSVLGSCCNFLTLFYIVFMVLYTV 204
>03_01_0347 -
2730242-2730425,2730541-2730692,2730782-2730940,
2734144-2734618,2734713-2734775,2734870-2735078
Length = 413
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 510 FGVLLWCLTYVGACFNGITLIILGW 584
FG+ WC+ Y G NG T+ W
Sbjct: 292 FGLKFWCIVYSGFACNGFTVFAQLW 316
>02_02_0011 +
6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 22 ARRP*QTPLVSHSHALRKVSACPSQHPRYAPSSTP-MPGSTHSDCTPK 162
A RP +TP S +H+L +VS P Q +S P M GS HS K
Sbjct: 75 ASRP-ETPRSSGAHSLSRVSLRPPQQVLSIRTSLPTMVGSQHSPAGKK 121
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 504 LKFGVLLWCLTYVGACFNGITLIIL 578
+K ++LW ++Y+G FN +TLI +
Sbjct: 124 IKVILILWVVSYIGMLFNFLTLIYI 148
>03_02_0927 -
12452262-12452428,12452538-12452607,12452689-12452830,
12452937-12453117,12454068-12454203
Length = 231
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 516 VLLWCLTYVGACFNGITLIILGWIALFTL 602
+LLW L+ +G + ITL G IAL T+
Sbjct: 156 LLLWLLSVIGNFCSSITLAYFGTIALVTI 184
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 7 RRESRARRP*QTPLVSHSHALRKVSACPSQHPRYAPSSTPMPGSTHSDCTP 159
RR+ + P +PL+ ++ ALR + + PR P P P TH+ P
Sbjct: 374 RRKPPSPSPPSSPLIENTSALRSTTTTDTTIPR-NPFVQPPPPPTHTHGPP 423
>03_05_0623 - 26208309-26208343,26208931-26210220,26210350-26210419
Length = 464
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 186 SASRSTTPLRGAVAVGRTRHGGRGWCIA 103
S+ + +P G + + R GG GWC+A
Sbjct: 352 SSGGAASPSNGGASQQQPRGGGGGWCVA 379
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 19 RARR-P*QTPLVSHSHA-LRKVSACPSQHPRYAPSSTPMPGSTHSDCTPK 162
R+RR P +T + S A + K A P +P AP P P S ++ TPK
Sbjct: 298 RSRRTPPRTRFSAGSGAEMNKQMASPPSNPPPAPPPPPPPPSRFNNTTPK 347
>08_02_0755 -
20814074-20814268,20814909-20814965,20815047-20815157,
20815291-20815344,20815731-20815943,20816655-20816773,
20816880-20816940,20817037-20817147,20817239-20817383,
20817477-20817523
Length = 370
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 97 HPRYAPSSTPMPGSTHSDCTPKW-SR*STGGTRHALA 204
HP P P PG++ D +W +R G RH LA
Sbjct: 325 HPMEVPIDLPPPGTSGGDSGGQWQARYVACGGRHTLA 361
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 189 RSASRSTTPLRGAVAVGRTRHGGR 118
RSASRS+ PL + A GR RH R
Sbjct: 33 RSASRSSRPLAPSRAPGRPRHPPR 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,759,988
Number of Sequences: 37544
Number of extensions: 185016
Number of successful extensions: 1044
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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