Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3g23
         (693 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9BUE0 Cluster: Mediator of RNA polymerase II transcrip...    96   8e-19
UniRef50_UPI0000584AE0 Cluster: PREDICTED: hypothetical protein;...    83   8e-15
UniRef50_A7S476 Cluster: Predicted protein; n=1; Nematostella ve...    75   1e-12
UniRef50_Q966M5 Cluster: Mediator of RNA polymerase II transcrip...    43   0.006
UniRef50_Q6JBJ1 Cluster: Putative uncharacterized protein; n=3; ...    40   0.044
UniRef50_UPI000049A27A Cluster: DNA replication licensing factor...    33   6.6  

>UniRef50_Q9BUE0 Cluster: Mediator of RNA polymerase II
           transcription subunit 18; n=25; Coelomata|Rep: Mediator
           of RNA polymerase II transcription subunit 18 - Homo
           sapiens (Human)
          Length = 208

 Score = 95.9 bits (228), Expect = 8e-19
 Identities = 46/82 (56%), Positives = 61/82 (74%)
 Frame = +1

Query: 382 EYLLQGSVLDSAVEVLLHRLRGLCDNVDAGPETFDDQEVCFSLRDPNHHQAPPLMLRVRK 561
           EYLLQGSVLD ++E L+HRLRGLCDN++  PETF D E+ F L+     QA P +LR R+
Sbjct: 20  EYLLQGSVLDHSLESLIHRLRGLCDNME--PETFLDHEMVFLLKG---QQASPFVLRARR 74

Query: 562 ALDARDMPFQLRYIGQPDLGDK 627
           ++D    P+ LRY+GQP++GDK
Sbjct: 75  SMDRAGAPWHLRYLGQPEMGDK 96


>UniRef50_UPI0000584AE0 Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 203

 Score = 82.6 bits (195), Expect = 8e-15
 Identities = 45/83 (54%), Positives = 58/83 (69%)
 Frame = +1

Query: 379 QEYLLQGSVLDSAVEVLLHRLRGLCDNVDAGPETFDDQEVCFSLRDPNHHQAPPLMLRVR 558
           QEYLL GS++D+A + LL RL+ LCDNV+  PETF D E+ F LR  N  QA   MLR R
Sbjct: 24  QEYLLVGSIMDAASDSLLLRLKALCDNVEI-PETFRDHEMVFILRGQN-QQA---MLRAR 78

Query: 559 KALDARDMPFQLRYIGQPDLGDK 627
           ++++     +QLRYIGQPD+ DK
Sbjct: 79  RSVNPPSSSWQLRYIGQPDVSDK 101


>UniRef50_A7S476 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 162

 Score = 75.4 bits (177), Expect = 1e-12
 Identities = 39/82 (47%), Positives = 50/82 (60%)
 Frame = +1

Query: 382 EYLLQGSVLDSAVEVLLHRLRGLCDNVDAGPETFDDQEVCFSLRDPNHHQAPPLMLRVRK 561
           EYLLQGSV    VE LLHRLRGLCDN       F D E+ ++LR+  +     +  R R 
Sbjct: 14  EYLLQGSVAKENVETLLHRLRGLCDNTAHDATKFADHEMVYTLRNSTN----TVTFRARH 69

Query: 562 ALDARDMPFQLRYIGQPDLGDK 627
           +L     P+QLRY+GQ ++GDK
Sbjct: 70  SLADPSAPWQLRYLGQAEMGDK 91


>UniRef50_Q966M5 Cluster: Mediator of RNA polymerase II
           transcription subunit 18; n=4; Rhabditida|Rep: Mediator
           of RNA polymerase II transcription subunit 18 -
           Caenorhabditis elegans
          Length = 232

 Score = 43.2 bits (97), Expect = 0.006
 Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
 Frame = +1

Query: 337 DSLSQALKANIIP--NQEYLLQGSVLDSAVEVLLHRLRGLCDNVDAGPETFDDQEVCFSL 510
           D   + L  N  P   QE +L GS+    V  L  RL GLC   D G E F + E+ FSL
Sbjct: 10  DGTQEKLSVNSTPYQTQECVLYGSIFAKNVPDLERRLAGLC---DPGCEEFFEHEMSFSL 66

Query: 511 RDPNHHQ-APPLMLRVRKALDARDMPF-QLRYIGQPDLGDK 627
           R          + LR R   + R   + QL+YIG P+   K
Sbjct: 67  RSSGIMDIKTDIKLRRRFRTEHRIQNYWQLKYIGVPEPDQK 107


>UniRef50_Q6JBJ1 Cluster: Putative uncharacterized protein; n=3;
           Dictyocaulus viviparus|Rep: Putative uncharacterized
           protein - Dictyocaulus viviparus (Bovine lungworm)
          Length = 195

 Score = 40.3 bits (90), Expect = 0.044
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = +1

Query: 379 QEYLLQGSVLDSAVEVLLHRLRGLCDNVDAGPETFDDQEVCFSLRDPNHHQAPPLMLRVR 558
           QE +L GSV    +  L  RL GLC   D G   F + ++ FSLR       P + +R+R
Sbjct: 23  QELILYGSVFADNLPDLERRLTGLC---DPGSTEFHEHDLSFSLRTGTD---PDVTIRLR 76

Query: 559 KALDARDM---PFQLRYIGQPDLGDK 627
           +  +        +Q RYIG P+   K
Sbjct: 77  RRFNVDSFTSHQWQFRYIGGPEPDQK 102


>UniRef50_UPI000049A27A Cluster: DNA replication licensing factor;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: DNA
           replication licensing factor - Entamoeba histolytica
           HM-1:IMSS
          Length = 733

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +1

Query: 346 SQALKA--NIIPNQEYLLQGSVLDSAVEVLLHRLRGLCD-NVDAGPETFDDQEVC 501
           SQ L+A  NI+P   Y+   S   + + V LHR  G  D  +++G     DQ VC
Sbjct: 355 SQMLRAVANIVPRGVYVSGSSTTKTGLTVALHRYSGTSDFTLESGALVLGDQGVC 409


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,664,964
Number of Sequences: 1657284
Number of extensions: 10636788
Number of successful extensions: 23251
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23247
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)