Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3g23
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006625-3|AAK68280.1|  232|Caenorhabditis elegans Mediator prot...    43   2e-04

>AC006625-3|AAK68280.1|  232|Caenorhabditis elegans Mediator protein
           18 protein.
          Length = 232

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
 Frame = +1

Query: 337 DSLSQALKANIIP--NQEYLLQGSVLDSAVEVLLHRLRGLCDNVDAGPETFDDQEVCFSL 510
           D   + L  N  P   QE +L GS+    V  L  RL GLC   D G E F + E+ FSL
Sbjct: 10  DGTQEKLSVNSTPYQTQECVLYGSIFAKNVPDLERRLAGLC---DPGCEEFFEHEMSFSL 66

Query: 511 RDPNHHQ-APPLMLRVRKALDARDMPF-QLRYIGQPDLGDK 627
           R          + LR R   + R   + QL+YIG P+   K
Sbjct: 67  RSSGIMDIKTDIKLRRRFRTEHRIQNYWQLKYIGVPEPDQK 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,219,165
Number of Sequences: 27780
Number of extensions: 267450
Number of successful extensions: 489
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)